Model info
| Transcription factor | NRF1 | ||||||||
| Model | NRF1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Consensus | bbGCGCvTGCGCvbbvbb | ||||||||
| wAUC | 0.9710327867041698 | ||||||||
| Best AUC | 0.9817918884120111 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NRF{0.0.6} | ||||||||
| TF subfamily | NRF-1 (alpha-pal){0.0.6.0.1} | ||||||||
| HGNC | 7996 | ||||||||
| EntrezGene | 4899 | ||||||||
| UniProt ID | NRF1_HUMAN | ||||||||
| UniProt AC | Q16656 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 29.079 | 236.938 | 158.513 | 75.47 |
| 02 | 32.157 | 139.543 | 66.761 | 261.54 |
| 03 | 28.54 | 2.88 | 467.789 | 0.791 |
| 04 | 41.907 | 429.792 | 23.772 | 4.529 |
| 05 | 22.813 | 5.288 | 469.218 | 2.68 |
| 06 | 3.981 | 483.494 | 10.91 | 1.615 |
| 07 | 156.352 | 231.694 | 79.076 | 32.879 |
| 08 | 5.219 | 0.0 | 4.156 | 490.625 |
| 09 | 0.992 | 0.0 | 499.008 | 0.0 |
| 10 | 5.613 | 492.395 | 0.0 | 1.992 |
| 11 | 0.82 | 2.648 | 490.829 | 5.702 |
| 12 | 0.0 | 458.103 | 1.842 | 40.055 |
| 13 | 259.616 | 73.121 | 142.401 | 24.863 |
| 14 | 58.477 | 123.808 | 236.417 | 81.298 |
| 15 | 63.709 | 117.497 | 131.554 | 187.24 |
| 16 | 73.756 | 124.468 | 271.442 | 30.334 |
| 17 | 53.675 | 156.591 | 220.457 | 69.278 |
| 18 | 60.241 | 154.085 | 219.891 | 65.783 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.419 | 0.634 | 0.235 | -0.497 |
| 02 | -1.323 | 0.109 | -0.617 | 0.732 |
| 03 | -1.436 | -3.351 | 1.311 | -3.988 |
| 04 | -1.069 | 1.226 | -1.609 | -3.035 |
| 05 | -1.647 | -2.918 | 1.314 | -3.398 |
| 06 | -3.13 | 1.344 | -2.318 | -3.687 |
| 07 | 0.221 | 0.611 | -0.451 | -1.302 |
| 08 | -2.928 | -4.4 | -3.099 | 1.358 |
| 09 | -3.906 | -4.4 | 1.375 | -4.4 |
| 10 | -2.871 | 1.362 | -4.4 | -3.575 |
| 11 | -3.976 | -3.405 | 1.359 | -2.859 |
| 12 | -4.4 | 1.29 | -3.618 | -1.112 |
| 13 | 0.725 | -0.528 | 0.129 | -1.567 |
| 14 | -0.746 | -0.009 | 0.631 | -0.424 |
| 15 | -0.662 | -0.061 | 0.05 | 0.4 |
| 16 | -0.519 | -0.004 | 0.769 | -1.378 |
| 17 | -0.829 | 0.223 | 0.562 | -0.58 |
| 18 | -0.717 | 0.207 | 0.56 | -0.631 |