Model info
| Transcription factor | Nr5a2 | ||||||||
| Model | NR5A2_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | bYCAAGGYCRn | ||||||||
| wAUC | 0.9059177435267767 | ||||||||
| Best AUC | 0.9111730299697037 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | FTZ-F1-related receptors (NR5){2.1.5} | ||||||||
| TF subfamily | LRH-1 (NR5A2){2.1.5.0.2} | ||||||||
| MGI | 1346834 | ||||||||
| EntrezGene | 26424 | ||||||||
| UniProt ID | NR5A2_MOUSE | ||||||||
| UniProt AC | P45448 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 52.272 | 131.357 | 111.527 | 204.844 |
| 02 | 29.675 | 175.569 | 13.274 | 281.482 |
| 03 | 0.899 | 471.895 | 22.393 | 4.813 |
| 04 | 490.484 | 3.641 | 1.142 | 4.733 |
| 05 | 485.008 | 0.859 | 10.806 | 3.327 |
| 06 | 12.511 | 0.0 | 487.489 | 0.0 |
| 07 | 1.896 | 0.0 | 498.104 | 0.0 |
| 08 | 37.944 | 181.065 | 22.548 | 258.443 |
| 09 | 10.767 | 401.279 | 8.901 | 79.053 |
| 10 | 380.866 | 20.014 | 51.423 | 47.697 |
| 11 | 101.309 | 149.953 | 159.814 | 88.924 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.855 | 0.049 | -0.113 | 0.489 |
| 02 | -1.399 | 0.336 | -2.144 | 0.805 |
| 03 | -3.943 | 1.319 | -1.665 | -2.99 |
| 04 | 1.358 | -3.193 | -3.849 | -3.002 |
| 05 | 1.347 | -3.96 | -2.326 | -3.255 |
| 06 | -2.197 | -4.4 | 1.352 | -4.4 |
| 07 | -3.603 | -4.4 | 1.373 | -4.4 |
| 08 | -1.164 | 0.367 | -1.658 | 0.72 |
| 09 | -2.329 | 1.158 | -2.494 | -0.451 |
| 10 | 1.106 | -1.769 | -0.871 | -0.944 |
| 11 | -0.207 | 0.18 | 0.243 | -0.336 |