NR5A2_MOUSE.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

Nr5a2

Model

NR5A2_MOUSE.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

16

Quality

A

Consensus

ndbYCAAGGYCRnnnn

wAUC

0.9128812709810099

Best AUC

0.9197057894990996

Benchmark datasets

2

Aligned words

501

TF family

FTZ-F1-related receptors (NR5){2.1.5}

TF subfamily

LRH-1 (NR5A2){2.1.5.0.2}

MGI

1346834

EntrezGene

26424

UniProt ID

NR5A2_MOUSE

UniProt AC

P45448

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	6.7921
0.0005	9.1581
0.0001	13.9371

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	44.527	18.993	103.56	21.204	28.71	6.611	2.857	40.885	19.211	25.995	32.86	25.994	17.746	11.925	57.112	41.81
02	19.956	18.795	37.289	34.154	9.022	22.575	0.922	31.005	16.779	43.183	53.535	82.891	9.506	39.064	29.345	51.979
03	8.572	20.429	4.192	22.069	6.951	59.528	0.0	57.139	1.935	56.4	8.235	54.52	12.413	36.435	4.21	146.97
04	0.0	28.958	0.913	0.0	0.899	164.551	5.311	2.03	0.0	13.691	2.947	0.0	1.007	258.94	19.854	0.897
05	1.907	0.0	0.0	0.0	461.171	1.859	2.202	0.907	28.134	0.0	0.891	0.0	2.03	0.0	0.0	0.897
06	473.391	0.859	15.815	3.177	1.859	0.0	0.0	0.0	3.094	0.0	0.0	0.0	1.805	0.0	0.0	0.0
07	4.72	0.0	475.429	0.0	0.0	0.0	0.859	0.0	0.0	0.0	14.922	0.893	0.0	0.0	2.328	0.849
08	0.0	0.0	4.72	0.0	0.0	0.0	0.0	0.0	1.773	0.0	491.765	0.0	0.0	0.0	1.742	0.0
09	0.899	0.873	0.0	0.0	0.0	0.0	0.0	0.0	44.702	181.406	21.751	250.368	0.0	0.0	0.0	0.0
10	1.782	40.076	1.762	1.982	6.579	146.959	1.204	27.538	0.0	20.767	0.0	0.984	3.118	196.418	5.792	45.04
11	6.964	0.88	3.635	0.0	336.933	10.218	20.542	36.527	6.007	0.844	1.908	0.0	34.335	7.702	23.91	9.596
12	80.047	107.845	135.605	60.741	5.511	3.979	0.873	9.28	9.289	18.795	13.538	8.373	4.686	22.311	11.34	7.787
13	39.34	19.031	30.272	10.89	46.229	45.104	10.793	50.805	37.179	60.223	31.508	32.446	10.518	16.594	25.894	33.175
14	30.698	40.669	38.205	23.694	41.626	56.115	3.081	40.13	19.52	29.589	31.29	18.066	16.072	42.698	37.934	30.611
15	36.352	13.551	43.449	14.565	52.249	24.48	3.899	88.443	38.663	13.765	35.311	22.77	19.556	21.497	32.925	38.524

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.35	-0.49	1.19	-0.382	-0.084	-1.509	-2.277	0.266	-0.479	-0.182	0.05	-0.182	-0.557	-0.944	0.597	0.288
02	-0.442	-0.5	0.175	0.088	-1.213	-0.32	-3.184	-0.008	-0.611	0.32	0.533	0.968	-1.162	0.221	-0.062	0.504
03	-1.262	-0.419	-1.933	-0.343	-1.461	0.639	-4.4	0.598	-2.611	0.585	-1.3	0.551	-0.905	0.152	-1.929	1.538
04	-4.4	-0.075	-3.191	-4.4	-3.201	1.651	-1.714	-2.571	-4.4	-0.81	-2.25	-4.4	-3.121	2.104	-0.447	-3.203
05	-2.624	-4.4	-4.4	-4.4	2.68	-2.644	-2.502	-3.195	-0.104	-4.4	-3.208	-4.4	-2.571	-4.4	-4.4	-3.203
06	2.706	-3.233	-0.669	-2.183	-2.644	-4.4	-4.4	-4.4	-2.207	-4.4	-4.4	-4.4	-2.669	-4.4	-4.4	-4.4
07	-1.823	-4.4	2.711	-4.4	-4.4	-4.4	-3.233	-4.4	-4.4	-4.4	-0.726	-3.206	-4.4	-4.4	-2.455	-3.241
08	-4.4	-4.4	-1.823	-4.4	-4.4	-4.4	-4.4	-4.4	-2.684	-4.4	2.744	-4.4	-4.4	-4.4	-2.698	-4.4
09	-3.201	-3.222	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	0.354	1.749	-0.357	2.07	-4.4	-4.4	-4.4	-4.4
10	-2.68	0.246	-2.689	-2.591	-1.513	1.538	-2.989	-0.125	-4.4	-0.402	-4.4	-3.138	-2.2	1.828	-1.633	0.362
11	-1.459	-3.216	-2.062	-4.4	2.367	-1.093	-0.413	0.154	-1.599	-3.246	-2.623	-4.4	0.093	-1.364	-0.264	-1.153
12	0.933	1.23	1.458	0.659	-1.679	-1.98	-3.222	-1.185	-1.185	-0.5	-0.821	-1.284	-1.83	-0.332	-0.992	-1.353
13	0.228	-0.488	-0.031	-1.032	0.388	0.363	-1.04	0.481	0.172	0.65	0.008	0.037	-1.065	-0.622	-0.185	0.059
14	-0.018	0.261	0.199	-0.273	0.284	0.58	-2.21	0.247	-0.463	-0.054	0.001	-0.539	-0.653	0.309	0.192	-0.02
15	0.15	-0.82	0.326	-0.749	0.509	-0.241	-1.999	1.032	0.211	-0.804	0.121	-0.312	-0.461	-0.369	0.052	0.207