Model info
| Transcription factor | NR5A2 | ||||||||
| Model | NR5A2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Consensus | bYCAAGGbYv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 46 | ||||||||
| TF family | FTZ-F1-related receptors (NR5){2.1.5} | ||||||||
| TF subfamily | LRH-1 (NR5A2){2.1.5.0.2} | ||||||||
| HGNC | 7984 | ||||||||
| EntrezGene | 2494 | ||||||||
| UniProt ID | NR5A2_HUMAN | ||||||||
| UniProt AC | O00482 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.234 | 12.255 | 9.755 | 20.082 |
| 02 | 1.957 | 17.772 | 2.717 | 22.88 |
| 03 | 0.0 | 45.326 | 0.0 | 0.0 |
| 04 | 45.326 | 0.0 | 0.0 | 0.0 |
| 05 | 44.674 | 0.0 | 0.652 | 0.0 |
| 06 | 0.87 | 0.0 | 44.457 | 0.0 |
| 07 | 0.0 | 0.0 | 43.261 | 2.065 |
| 08 | 4.891 | 18.098 | 5.217 | 17.12 |
| 09 | 1.087 | 27.826 | 2.174 | 14.239 |
| 10 | 23.424 | 9.13 | 7.446 | 5.326 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.076 | 0.073 | -0.137 | 0.538 |
| 02 | -1.44 | 0.421 | -1.208 | 0.663 |
| 03 | -2.556 | 1.326 | -2.556 | -2.556 |
| 04 | 1.326 | -2.556 | -2.556 | -2.556 |
| 05 | 1.312 | -2.556 | -2.035 | -2.556 |
| 06 | -1.908 | -2.556 | 1.307 | -2.556 |
| 07 | -2.556 | -2.556 | 1.281 | -1.404 |
| 08 | -0.743 | 0.439 | -0.689 | 0.386 |
| 09 | -1.795 | 0.851 | -1.368 | 0.212 |
| 10 | 0.685 | -0.197 | -0.38 | -0.671 |