Model info
| Transcription factor | Nr4a1 | ||||||||
| Model | NR4A1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | RAAGGTCAv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 22 | ||||||||
| TF family | NGFI-B-related receptors (NR4){2.1.4} | ||||||||
| TF subfamily | NGFI-B (Nur77, NR4A1){2.1.4.0.1} | ||||||||
| MGI | 1352454 | ||||||||
| EntrezGene | 15370 | ||||||||
| UniProt ID | NR4A1_MOUSE | ||||||||
| UniProt AC | P12813 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 9.573 | 4.906 | 6.521 | 0.0 |
| 02 | 21.0 | 0.0 | 0.0 | 0.0 |
| 03 | 20.402 | 0.0 | 0.0 | 0.598 |
| 04 | 0.0 | 0.0 | 21.0 | 0.0 |
| 05 | 0.598 | 0.0 | 20.402 | 0.0 |
| 06 | 1.197 | 2.872 | 0.0 | 16.932 |
| 07 | 0.0 | 19.923 | 0.0 | 1.077 |
| 08 | 20.402 | 0.0 | 0.0 | 0.598 |
| 09 | 4.188 | 8.675 | 5.684 | 2.453 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.542 | -0.059 | 0.192 | -2.067 |
| 02 | 1.287 | -2.067 | -2.067 | -2.067 |
| 03 | 1.259 | -2.067 | -2.067 | -1.487 |
| 04 | -2.067 | -2.067 | 1.287 | -2.067 |
| 05 | -1.487 | -2.067 | 1.259 | -2.067 |
| 06 | -1.122 | -0.504 | -2.067 | 1.08 |
| 07 | -2.067 | 1.236 | -2.067 | -1.185 |
| 08 | 1.259 | -2.067 | -2.067 | -1.487 |
| 09 | -0.194 | 0.451 | 0.07 | -0.626 |