Model info
| Transcription factor | NR2E3 | ||||||||
| Model | NR2E3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | nAAKTCAAAARKMM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 23 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Tailless-like receptors (NR2E){2.1.3.3} | ||||||||
| HGNC | 7974 | ||||||||
| EntrezGene | 10002 | ||||||||
| UniProt ID | NR2E3_HUMAN | ||||||||
| UniProt AC | Q9Y5X4 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.341 | 3.5 | 4.278 | 3.5 |
| 02 | 18.73 | 1.556 | 1.556 | 0.778 |
| 03 | 17.763 | 0.778 | 3.3 | 0.778 |
| 04 | 1.556 | 1.556 | 16.396 | 3.111 |
| 05 | 1.556 | 0.0 | 2.333 | 18.73 |
| 06 | 1.556 | 20.285 | 0.778 | 0.0 |
| 07 | 21.063 | 0.0 | 0.778 | 0.778 |
| 08 | 17.952 | 3.111 | 1.556 | 0.0 |
| 09 | 21.841 | 0.0 | 0.0 | 0.778 |
| 10 | 18.541 | 0.0 | 3.3 | 0.778 |
| 11 | 5.634 | 1.556 | 13.874 | 1.556 |
| 12 | 0.778 | 1.556 | 4.667 | 15.619 |
| 13 | 3.111 | 15.619 | 2.333 | 1.556 |
| 14 | 16.591 | 3.306 | 1.75 | 0.972 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.633 | -0.408 | -0.241 | -0.408 |
| 02 | 1.109 | -1.014 | -1.014 | -1.419 |
| 03 | 1.058 | -1.419 | -0.456 | -1.419 |
| 04 | -1.014 | -1.014 | 0.982 | -0.503 |
| 05 | -1.014 | -2.111 | -0.726 | 1.109 |
| 06 | -1.014 | 1.186 | -1.419 | -2.111 |
| 07 | 1.222 | -2.111 | -1.419 | -1.419 |
| 08 | 1.069 | -0.503 | -1.014 | -2.111 |
| 09 | 1.257 | -2.111 | -2.111 | -1.419 |
| 10 | 1.1 | -2.111 | -0.456 | -1.419 |
| 11 | -0.003 | -1.014 | 0.823 | -1.014 |
| 12 | -1.419 | -1.014 | -0.167 | 0.936 |
| 13 | -0.503 | 0.936 | -0.726 | -1.014 |
| 14 | 0.993 | -0.454 | -0.934 | -1.301 |