Model info
| Transcription factor | NR2E1 | ||||||||
| Model | NR2E1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | dvWTGACTThTTGMYTK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 70 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Tailless-like receptors (NR2E){2.1.3.3} | ||||||||
| HGNC | 7973 | ||||||||
| EntrezGene | 7101 | ||||||||
| UniProt ID | NR2E1_HUMAN | ||||||||
| UniProt AC | Q9Y466 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 25.141 | 9.91 | 14.11 | 12.739 |
| 02 | 26.507 | 13.375 | 11.739 | 10.28 |
| 03 | 10.689 | 6.312 | 8.412 | 36.488 |
| 04 | 0.569 | 0.569 | 0.569 | 60.193 |
| 05 | 1.459 | 2.277 | 58.165 | 0.0 |
| 06 | 57.435 | 0.0 | 2.189 | 2.277 |
| 07 | 0.0 | 61.901 | 0.0 | 0.0 |
| 08 | 0.0 | 0.73 | 3.007 | 58.165 |
| 09 | 0.0 | 0.0 | 0.0 | 61.901 |
| 10 | 21.334 | 9.573 | 5.836 | 25.159 |
| 11 | 5.195 | 3.648 | 3.736 | 49.322 |
| 12 | 2.277 | 3.007 | 3.007 | 53.61 |
| 13 | 4.466 | 2.277 | 54.428 | 0.73 |
| 14 | 48.437 | 5.947 | 3.758 | 3.758 |
| 15 | 5.057 | 46.729 | 1.321 | 8.794 |
| 16 | 3.598 | 5.698 | 3.51 | 49.095 |
| 17 | 2.962 | 7.34 | 8.246 | 43.352 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.461 | -0.411 | -0.086 | -0.181 |
| 02 | 0.512 | -0.136 | -0.257 | -0.378 |
| 03 | -0.342 | -0.81 | -0.558 | 0.821 |
| 04 | -2.333 | -2.333 | -2.333 | 1.311 |
| 05 | -1.891 | -1.607 | 1.277 | -2.773 |
| 06 | 1.265 | -2.773 | -1.634 | -1.607 |
| 07 | -2.773 | 1.338 | -2.773 | -2.773 |
| 08 | -2.773 | -2.238 | -1.408 | 1.277 |
| 09 | -2.773 | -2.773 | -2.773 | 1.338 |
| 10 | 0.304 | -0.443 | -0.877 | 0.462 |
| 11 | -0.975 | -1.261 | -1.242 | 1.115 |
| 12 | -1.607 | -1.408 | -1.408 | 1.197 |
| 13 | -1.1 | -1.607 | 1.212 | -2.238 |
| 14 | 1.098 | -0.861 | -1.237 | -1.237 |
| 15 | -0.997 | 1.062 | -1.948 | -0.519 |
| 16 | -1.271 | -0.897 | -1.291 | 1.111 |
| 17 | -1.419 | -0.679 | -0.576 | 0.989 |