Transcription factor | Nr1h4 | ||||||||
Model | NR1H4_MOUSE.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Consensus | RRGGTCAnKRWCCY | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 45 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
TF subfamily | LXR (NR1H){2.1.2.7} | ||||||||
MGI | 1352464 | ||||||||
EntrezGene | 20186 | ||||||||
UniProt ID | NR1H4_MOUSE | ||||||||
UniProt AC | Q60641 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 22.532 | 1.943 | 16.964 | 3.729 |
02 | 20.588 | 0.945 | 23.634 | 0.0 |
03 | 0.0 | 0.945 | 43.172 | 1.05 |
04 | 1.05 | 0.0 | 39.391 | 4.727 |
05 | 0.84 | 2.836 | 1.05 | 40.441 |
06 | 0.945 | 37.29 | 5.882 | 1.05 |
07 | 44.118 | 0.0 | 1.05 | 0.0 |
08 | 17.857 | 8.613 | 8.929 | 9.769 |
09 | 1.996 | 5.882 | 7.143 | 30.147 |
10 | 9.979 | 1.05 | 33.088 | 1.05 |
11 | 27.416 | 5.777 | 3.782 | 8.193 |
12 | 2.731 | 38.445 | 0.945 | 3.046 |
13 | 1.05 | 40.126 | 0.945 | 3.046 |
14 | 3.887 | 5.042 | 4.832 | 31.408 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.651 | -1.442 | 0.381 | -0.961 |
02 | 0.565 | -1.864 | 0.697 | -2.554 |
03 | -2.554 | -1.864 | 1.282 | -1.81 |
04 | -1.81 | -2.554 | 1.192 | -0.768 |
05 | -1.921 | -1.173 | -1.81 | 1.218 |
06 | -1.864 | 1.139 | -0.583 | -1.81 |
07 | 1.303 | -2.554 | -1.81 | -2.554 |
08 | 0.429 | -0.247 | -0.214 | -0.133 |
09 | -1.424 | -0.583 | -0.414 | 0.932 |
10 | -0.113 | -1.81 | 1.022 | -1.81 |
11 | 0.84 | -0.599 | -0.95 | -0.292 |
12 | -1.201 | 1.169 | -1.864 | -1.119 |
13 | -1.81 | 1.21 | -1.864 | -1.119 |
14 | -0.928 | -0.714 | -0.75 | 0.972 |