Model info
Transcription factorNR1H4
ModelNR1H4_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length14
Quality
C
ConsensusRRGGTCAnKRWCCY
wAUC
Best AUC
Benchmark datasets
Aligned words45
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
HGNC7967
EntrezGene9971
UniProt IDNR1H4_HUMAN
UniProt ACQ96RI1
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.3101
0.0005 5.2071
0.0001 7.0771
PCM
ACGT
0122.5321.94316.9643.729
0220.5880.94523.6340.0
030.00.94543.1721.05
041.050.039.3914.727
050.842.8361.0540.441
060.94537.295.8821.05
0744.1180.01.050.0
0817.8578.6138.9299.769
091.9965.8827.14330.147
109.9791.0533.0881.05
1127.4165.7773.7828.193
122.73138.4450.9453.046
131.0540.1260.9453.046
143.8875.0424.83231.408
PWM
ACGT
010.651-1.4420.381-0.961
020.565-1.8640.697-2.554
03-2.554-1.8641.282-1.81
04-1.81-2.5541.192-0.768
05-1.921-1.173-1.811.218
06-1.8641.139-0.583-1.81
071.303-2.554-1.81-2.554
080.429-0.247-0.214-0.133
09-1.424-0.583-0.4140.932
10-0.113-1.811.022-1.81
110.84-0.599-0.95-0.292
12-1.2011.169-1.864-1.119
13-1.811.21-1.864-1.119
14-0.928-0.714-0.750.972