Model info
| Transcription factor | NR1H4 | ||||||||
| Model | NR1H4_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | RRGGTCAnKRWCCY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 45 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | LXR (NR1H){2.1.2.7} | ||||||||
| HGNC | 7967 | ||||||||
| EntrezGene | 9971 | ||||||||
| UniProt ID | NR1H4_HUMAN | ||||||||
| UniProt AC | Q96RI1 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 22.532 | 1.943 | 16.964 | 3.729 |
| 02 | 20.588 | 0.945 | 23.634 | 0.0 |
| 03 | 0.0 | 0.945 | 43.172 | 1.05 |
| 04 | 1.05 | 0.0 | 39.391 | 4.727 |
| 05 | 0.84 | 2.836 | 1.05 | 40.441 |
| 06 | 0.945 | 37.29 | 5.882 | 1.05 |
| 07 | 44.118 | 0.0 | 1.05 | 0.0 |
| 08 | 17.857 | 8.613 | 8.929 | 9.769 |
| 09 | 1.996 | 5.882 | 7.143 | 30.147 |
| 10 | 9.979 | 1.05 | 33.088 | 1.05 |
| 11 | 27.416 | 5.777 | 3.782 | 8.193 |
| 12 | 2.731 | 38.445 | 0.945 | 3.046 |
| 13 | 1.05 | 40.126 | 0.945 | 3.046 |
| 14 | 3.887 | 5.042 | 4.832 | 31.408 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.651 | -1.442 | 0.381 | -0.961 |
| 02 | 0.565 | -1.864 | 0.697 | -2.554 |
| 03 | -2.554 | -1.864 | 1.282 | -1.81 |
| 04 | -1.81 | -2.554 | 1.192 | -0.768 |
| 05 | -1.921 | -1.173 | -1.81 | 1.218 |
| 06 | -1.864 | 1.139 | -0.583 | -1.81 |
| 07 | 1.303 | -2.554 | -1.81 | -2.554 |
| 08 | 0.429 | -0.247 | -0.214 | -0.133 |
| 09 | -1.424 | -0.583 | -0.414 | 0.932 |
| 10 | -0.113 | -1.81 | 1.022 | -1.81 |
| 11 | 0.84 | -0.599 | -0.95 | -0.292 |
| 12 | -1.201 | 1.169 | -1.864 | -1.119 |
| 13 | -1.81 | 1.21 | -1.864 | -1.119 |
| 14 | -0.928 | -0.714 | -0.75 | 0.972 |