NR1H2_MOUSE.H10MO.D motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

Nr1h2

Model

NR1H2_MOUSE.H10MO.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Origin

HOCOMOCO v9

Model length

19

Quality

D

Consensus

TMRAGGTCAAAGGTCAASK

wAUC

Best AUC

Benchmark datasets

Aligned words

24

TF family

Thyroid hormone receptor-related factors (NR1){2.1.2}

TF subfamily

LXR (NR1H){2.1.2.7}

MGI

1352463

EntrezGene

22260

UniProt ID

NR1H2_MOUSE

UniProt AC

Q60644

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	0.8371
0.0005	2.1142
0.0001	4.8171

PCM

	A	C	G	T
01	0.781	0.781	0.781	16.408
02	13.283	3.907	0.0	1.563
03	13.283	0.0	3.907	1.563
04	14.845	0.0	3.907	0.0
05	0.0	0.0	18.752	0.0
06	0.0	0.0	17.971	0.781
07	0.0	0.0	0.0	18.752
08	0.0	18.752	0.0	0.0
09	18.752	0.0	0.0	0.0
10	18.752	0.0	0.0	0.0
11	18.752	0.0	0.0	0.0
12	0.0	0.0	18.752	0.0
13	0.0	0.0	18.752	0.0
14	0.0	0.0	0.0	18.752
15	0.0	18.752	0.0	0.0
16	18.752	0.0	0.0	0.0
17	15.627	0.0	1.563	1.563
18	0.0	11.72	4.688	2.344
19	0.0	0.781	11.72	6.251

PWM

	A	C	G	T
01	-1.275	-1.275	-1.275	1.151
02	0.95	-0.156	-2.001	-0.859
03	0.95	-2.001	-0.156	-0.859
04	1.056	-2.001	-0.156	-2.001
05	-2.001	-2.001	1.279	-2.001
06	-2.001	-2.001	1.238	-1.275
07	-2.001	-2.001	-2.001	1.279
08	-2.001	1.279	-2.001	-2.001
09	1.279	-2.001	-2.001	-2.001
10	1.279	-2.001	-2.001	-2.001
11	1.279	-2.001	-2.001	-2.001
12	-2.001	-2.001	1.279	-2.001
13	-2.001	-2.001	1.279	-2.001
14	-2.001	-2.001	-2.001	1.279
15	-2.001	1.279	-2.001	-2.001
16	1.279	-2.001	-2.001	-2.001
17	1.105	-2.001	-0.859	-0.859
18	-2.001	0.832	0.0	-0.566
19	-2.001	-1.275	0.832	0.253