Model info
| Transcription factor | Nr1d1 | ||||||||
| Model | NR1D1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | vdRdvvvnAGGbCAvdddv | ||||||||
| wAUC | 0.7223133247224963 | ||||||||
| Best AUC | 0.7223133247224964 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Rev-ErbA (NR1D){2.1.2.3} | ||||||||
| MGI | 2444210 | ||||||||
| EntrezGene | 217166 | ||||||||
| UniProt ID | NR1D1_MOUSE | ||||||||
| UniProt AC | Q3UV55 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 223.036 | 96.635 | 145.109 | 35.22 |
| 02 | 195.991 | 28.03 | 212.31 | 63.669 |
| 03 | 127.113 | 57.215 | 283.927 | 31.744 |
| 04 | 179.352 | 31.97 | 166.993 | 121.685 |
| 05 | 114.467 | 170.85 | 152.592 | 62.092 |
| 06 | 209.035 | 154.78 | 89.622 | 46.563 |
| 07 | 173.737 | 148.927 | 120.306 | 57.03 |
| 08 | 186.763 | 93.69 | 98.839 | 120.708 |
| 09 | 343.24 | 0.0 | 153.649 | 3.111 |
| 10 | 5.692 | 0.0 | 477.097 | 17.211 |
| 11 | 11.358 | 1.778 | 406.599 | 80.266 |
| 12 | 28.426 | 87.021 | 115.887 | 268.666 |
| 13 | 0.0 | 479.528 | 12.645 | 7.827 |
| 14 | 491.28 | 1.919 | 0.0 | 6.801 |
| 15 | 94.627 | 128.618 | 251.295 | 25.46 |
| 16 | 176.173 | 43.486 | 134.237 | 146.105 |
| 17 | 98.752 | 31.293 | 283.59 | 86.365 |
| 18 | 82.359 | 50.125 | 246.582 | 120.935 |
| 19 | 103.908 | 100.58 | 208.282 | 87.231 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.574 | -0.254 | 0.147 | -1.236 |
| 02 | 0.445 | -1.453 | 0.525 | -0.663 |
| 03 | 0.017 | -0.767 | 0.814 | -1.335 |
| 04 | 0.357 | -1.328 | 0.287 | -0.027 |
| 05 | -0.087 | 0.309 | 0.197 | -0.687 |
| 06 | 0.509 | 0.211 | -0.328 | -0.967 |
| 07 | 0.326 | 0.173 | -0.038 | -0.77 |
| 08 | 0.397 | -0.284 | -0.232 | -0.034 |
| 09 | 1.002 | -4.4 | 0.204 | -3.301 |
| 10 | -2.86 | -4.4 | 1.33 | -1.909 |
| 11 | -2.283 | -3.637 | 1.171 | -0.436 |
| 12 | -1.44 | -0.357 | -0.075 | 0.759 |
| 13 | -4.4 | 1.335 | -2.188 | -2.602 |
| 14 | 1.36 | -3.596 | -4.4 | -2.718 |
| 15 | -0.274 | 0.028 | 0.692 | -1.544 |
| 16 | 0.34 | -1.033 | 0.07 | 0.154 |
| 17 | -0.232 | -1.349 | 0.812 | -0.364 |
| 18 | -0.411 | -0.896 | 0.673 | -0.033 |
| 19 | -0.182 | -0.214 | 0.506 | -0.354 |