Model info
| Transcription factor | NR1D1 | ||||||||
| Model | NR1D1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | WWAAvTAGGTCAnd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 13 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Rev-ErbA (NR1D){2.1.2.3} | ||||||||
| HGNC | 7962 | ||||||||
| EntrezGene | 9572 | ||||||||
| UniProt ID | NR1D1_HUMAN | ||||||||
| UniProt AC | P20393 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.564 | 0.508 | 2.325 | 2.539 |
| 02 | 6.843 | 0.0 | 1.069 | 5.025 |
| 03 | 10.906 | 0.962 | 0.0 | 1.069 |
| 04 | 10.906 | 0.0 | 0.0 | 2.031 |
| 05 | 4.063 | 1.925 | 5.881 | 1.069 |
| 06 | 0.0 | 1.069 | 1.069 | 10.799 |
| 07 | 10.906 | 0.0 | 2.031 | 0.0 |
| 08 | 0.0 | 0.0 | 11.868 | 1.069 |
| 09 | 0.0 | 0.0 | 12.937 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 12.937 |
| 11 | 0.0 | 12.082 | 0.0 | 0.855 |
| 12 | 12.937 | 0.0 | 0.0 | 0.0 |
| 13 | 4.918 | 1.069 | 4.918 | 2.031 |
| 14 | 5.506 | 0.481 | 2.513 | 4.437 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.75 | -1.216 | -0.267 | -0.198 |
| 02 | 0.658 | -1.801 | -0.818 | 0.38 |
| 03 | 1.092 | -0.883 | -1.801 | -0.818 |
| 04 | 1.092 | -1.801 | -1.801 | -0.372 |
| 05 | 0.194 | -0.413 | 0.521 | -0.818 |
| 06 | -1.801 | -0.818 | -0.818 | 1.083 |
| 07 | 1.092 | -1.801 | -0.372 | -1.801 |
| 08 | -1.801 | -1.801 | 1.172 | -0.818 |
| 09 | -1.801 | -1.801 | 1.254 | -1.801 |
| 10 | -1.801 | -1.801 | -1.801 | 1.254 |
| 11 | -1.801 | 1.189 | -1.801 | -0.952 |
| 12 | 1.254 | -1.801 | -1.801 | -1.801 |
| 13 | 0.361 | -0.818 | 0.361 | -0.372 |
| 14 | 0.461 | -1.24 | -0.206 | 0.27 |