Model info
| Transcription factor | NOTO | ||||||||
| Model | NOTO_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | vYTAATTWRnb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26150 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NOTO{3.1.2.20} | ||||||||
| HGNC | 31839 | ||||||||
| EntrezGene | 344022 | ||||||||
| UniProt ID | NOTO_HUMAN | ||||||||
| UniProt AC | A8MTQ0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7314.75 | 4654.75 | 10571.75 | 3303.75 |
| 02 | 1246.0 | 7143.0 | 1872.0 | 15584.0 |
| 03 | 536.25 | 558.25 | 356.25 | 24394.25 |
| 04 | 25289.5 | 131.5 | 175.5 | 248.5 |
| 05 | 25705.75 | 10.75 | 69.75 | 58.75 |
| 06 | 14.25 | 13.25 | 54.25 | 25763.25 |
| 07 | 589.75 | 9.75 | 4720.75 | 20524.75 |
| 08 | 18234.0 | 444.0 | 2935.0 | 4232.0 |
| 09 | 4211.75 | 1325.75 | 19156.75 | 1150.75 |
| 10 | 5365.5 | 5142.5 | 8220.5 | 7116.5 |
| 11 | 3105.75 | 5128.75 | 4000.75 | 13609.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.124 | -0.328 | 0.492 | -0.67 |
| 02 | -1.644 | 0.1 | -1.238 | 0.88 |
| 03 | -2.485 | -2.445 | -2.891 | 1.328 |
| 04 | 1.364 | -3.876 | -3.592 | -3.248 |
| 05 | 1.381 | -6.187 | -4.493 | -4.658 |
| 06 | -5.953 | -6.015 | -4.735 | 1.383 |
| 07 | -2.39 | -6.265 | -0.314 | 1.156 |
| 08 | 1.037 | -2.672 | -0.789 | -0.423 |
| 09 | -0.428 | -1.582 | 1.087 | -1.724 |
| 10 | -0.186 | -0.228 | 0.241 | 0.097 |
| 11 | -0.732 | -0.231 | -0.479 | 0.745 |