Model info
| Transcription factor | NKX6-1 | ||||||||
| Model | NKX61_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | hdWTAATKRbnhWWWWWdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 46995 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-6{3.1.2.19} | ||||||||
| HGNC | 7839 | ||||||||
| EntrezGene | 4825 | ||||||||
| UniProt ID | NKX61_HUMAN | ||||||||
| UniProt AC | P78426 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 18730.497 | 9305.342 | 7379.365 | 11322.472 |
| 02 | 19487.74 | 7552.651 | 7754.28 | 11943.006 |
| 03 | 8479.621 | 3291.405 | 4231.606 | 30735.044 |
| 04 | 1580.832 | 2122.403 | 1498.287 | 41536.154 |
| 05 | 43164.074 | 376.147 | 2590.451 | 607.003 |
| 06 | 45125.51 | 22.985 | 70.632 | 1518.549 |
| 07 | 1576.263 | 84.725 | 190.087 | 44886.601 |
| 08 | 1801.993 | 586.703 | 16108.742 | 28240.238 |
| 09 | 32037.231 | 451.142 | 13976.672 | 272.631 |
| 10 | 2745.549 | 24750.362 | 14208.034 | 5033.731 |
| 11 | 6852.57 | 16966.265 | 13290.195 | 9628.646 |
| 12 | 6922.018 | 11215.201 | 3021.258 | 25579.198 |
| 13 | 11716.415 | 4809.881 | 1636.459 | 28574.922 |
| 14 | 14044.486 | 2630.34 | 670.925 | 29391.926 |
| 15 | 23675.087 | 850.442 | 847.758 | 21364.389 |
| 16 | 29451.896 | 2211.452 | 672.267 | 14402.062 |
| 17 | 17802.791 | 1295.413 | 3047.334 | 24592.138 |
| 18 | 10011.475 | 2311.418 | 8389.523 | 26025.261 |
| 19 | 19287.567 | 4146.095 | 9867.421 | 13436.593 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.472 | -0.228 | -0.459 | -0.031 |
| 02 | 0.511 | -0.436 | -0.41 | 0.022 |
| 03 | -0.321 | -1.266 | -1.015 | 0.967 |
| 04 | -1.999 | -1.705 | -2.052 | 1.268 |
| 05 | 1.307 | -3.429 | -1.506 | -2.953 |
| 06 | 1.351 | -6.121 | -5.071 | -2.039 |
| 07 | -2.002 | -4.896 | -4.105 | 1.346 |
| 08 | -1.868 | -2.987 | 0.321 | 0.882 |
| 09 | 1.008 | -3.249 | 0.179 | -3.748 |
| 10 | -1.448 | 0.75 | 0.196 | -0.842 |
| 11 | -0.533 | 0.373 | 0.129 | -0.193 |
| 12 | -0.523 | -0.041 | -1.352 | 0.783 |
| 13 | 0.003 | -0.887 | -1.964 | 0.894 |
| 14 | 0.184 | -1.49 | -2.854 | 0.922 |
| 15 | 0.706 | -2.617 | -2.62 | 0.603 |
| 16 | 0.924 | -1.664 | -2.852 | 0.209 |
| 17 | 0.421 | -2.198 | -1.343 | 0.744 |
| 18 | -0.154 | -1.619 | -0.331 | 0.801 |
| 19 | 0.501 | -1.036 | -0.169 | 0.14 |