Model info
| Transcription factor | Nkx3-2 | ||||||||
| Model | NKX32_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | nRYWAAGTGSR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 19 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-3{3.1.2.16} | ||||||||
| MGI | 108015 | ||||||||
| EntrezGene | 12020 | ||||||||
| UniProt ID | NKX32_MOUSE | ||||||||
| UniProt AC | P97503 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.287 | 3.857 | 3.857 | 3.857 |
| 02 | 5.143 | 0.0 | 10.429 | 4.286 |
| 03 | 0.857 | 6.0 | 2.571 | 10.429 |
| 04 | 4.43 | 0.857 | 3.428 | 11.142 |
| 05 | 15.572 | 0.0 | 2.571 | 1.714 |
| 06 | 19.857 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 19.857 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 19.857 |
| 09 | 0.857 | 0.0 | 19.0 | 0.0 |
| 10 | 0.857 | 3.428 | 13.858 | 1.714 |
| 11 | 7.714 | 5.143 | 7.001 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.458 | -0.216 | -0.216 | -0.216 |
| 02 | 0.031 | -2.034 | 0.671 | -0.127 |
| 03 | -1.27 | 0.167 | -0.543 | 0.671 |
| 04 | -0.098 | -1.27 | -0.313 | 0.733 |
| 05 | 1.05 | -2.034 | -0.543 | -0.842 |
| 06 | 1.283 | -2.034 | -2.034 | -2.034 |
| 07 | -2.034 | -2.034 | 1.283 | -2.034 |
| 08 | -2.034 | -2.034 | -2.034 | 1.283 |
| 09 | -1.27 | -2.034 | 1.241 | -2.034 |
| 10 | -1.27 | -0.313 | 0.939 | -0.842 |
| 11 | 0.393 | 0.031 | 0.305 | -2.034 |