Model info
| Transcription factor | NKX3-1 | ||||||||
| Model | NKX31_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | WWTAAGTAWWhdh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 43 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-3{3.1.2.16} | ||||||||
| HGNC | 7838 | ||||||||
| EntrezGene | 4824 | ||||||||
| UniProt ID | NKX31_HUMAN | ||||||||
| UniProt AC | Q99801 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 23.556 | 1.479 | 2.39 | 15.576 |
| 02 | 21.956 | 3.869 | 1.823 | 15.352 |
| 03 | 1.823 | 2.957 | 0.0 | 38.22 |
| 04 | 41.866 | 1.134 | 0.0 | 0.0 |
| 05 | 38.909 | 2.268 | 0.0 | 1.823 |
| 06 | 4.091 | 0.0 | 33.461 | 5.448 |
| 07 | 0.0 | 0.0 | 0.0 | 43.0 |
| 08 | 36.498 | 1.722 | 4.78 | 0.0 |
| 09 | 8.183 | 7.048 | 1.944 | 25.825 |
| 10 | 23.09 | 1.722 | 3.869 | 14.319 |
| 11 | 9.317 | 8.447 | 4.78 | 20.456 |
| 12 | 20.234 | 2.046 | 7.96 | 12.76 |
| 13 | 18.026 | 5.975 | 3.929 | 15.069 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.74 | -1.575 | -1.256 | 0.346 |
| 02 | 0.672 | -0.888 | -1.442 | 0.332 |
| 03 | -1.442 | -1.098 | -2.52 | 1.209 |
| 04 | 1.298 | -1.729 | -2.52 | -2.52 |
| 05 | 1.226 | -1.293 | -2.52 | -1.442 |
| 06 | -0.843 | -2.52 | 1.079 | -0.604 |
| 07 | -2.52 | -2.52 | -2.52 | 1.324 |
| 08 | 1.164 | -1.48 | -0.715 | -2.52 |
| 09 | -0.248 | -0.381 | -1.399 | 0.828 |
| 10 | 0.721 | -1.48 | -0.888 | 0.266 |
| 11 | -0.131 | -0.219 | -0.715 | 0.604 |
| 12 | 0.594 | -1.365 | -0.273 | 0.159 |
| 13 | 0.484 | -0.525 | -0.876 | 0.314 |