Model info
| Transcription factor | Nkx2-5 | ||||||||
| Model | NKX25_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Consensus | KbAAGTG | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 60 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-4{3.1.2.17} | ||||||||
| MGI | 97350 | ||||||||
| EntrezGene | 18091 | ||||||||
| UniProt ID | NKX25_MOUSE | ||||||||
| UniProt AC | P42582 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.989 | 3.489 | 9.831 | 38.274 |
| 02 | 2.085 | 26.095 | 9.304 | 21.099 |
| 03 | 57.942 | 0.0 | 0.642 | 0.0 |
| 04 | 53.685 | 0.0 | 2.406 | 2.492 |
| 05 | 0.0 | 0.642 | 50.786 | 7.155 |
| 06 | 1.77 | 0.0 | 0.802 | 56.011 |
| 07 | 4.984 | 0.0 | 52.797 | 0.802 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.671 | -1.246 | -0.367 | 0.92 |
| 02 | -1.619 | 0.549 | -0.417 | 0.345 |
| 03 | 1.326 | -2.734 | -2.245 | -2.734 |
| 04 | 1.251 | -2.734 | -1.521 | -1.496 |
| 05 | -2.734 | -2.245 | 1.196 | -0.651 |
| 06 | -1.726 | -2.734 | -2.153 | 1.292 |
| 07 | -0.959 | -2.734 | 1.234 | -2.153 |