Model info
| Transcription factor | Nkx2-2 | ||||||||
| Model | NKX22_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Consensus | bWYAAGTRbTTd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 25 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-2.2{3.1.2.15} | ||||||||
| MGI | 97347 | ||||||||
| EntrezGene | 18088 | ||||||||
| UniProt ID | NKX22_MOUSE | ||||||||
| UniProt AC | P42586 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.415 | 2.854 | 7.585 | 11.634 |
| 02 | 5.707 | 0.0 | 1.659 | 17.122 |
| 03 | 0.0 | 7.902 | 2.537 | 14.049 |
| 04 | 24.488 | 0.0 | 0.0 | 0.0 |
| 05 | 24.488 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 24.488 | 0.0 |
| 07 | 0.878 | 0.0 | 0.0 | 23.61 |
| 08 | 8.78 | 0.878 | 14.829 | 0.0 |
| 09 | 0.439 | 8.341 | 10.537 | 5.171 |
| 10 | 2.634 | 0.878 | 1.317 | 19.659 |
| 11 | 2.195 | 0.0 | 1.756 | 20.537 |
| 12 | 6.585 | 3.073 | 6.049 | 8.78 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.767 | -0.639 | 0.192 | 0.586 |
| 02 | -0.062 | -2.158 | -1.035 | 0.951 |
| 03 | -2.158 | 0.229 | -0.73 | 0.763 |
| 04 | 1.296 | -2.158 | -2.158 | -2.158 |
| 05 | 1.296 | -2.158 | -2.158 | -2.158 |
| 06 | -2.158 | -2.158 | 1.296 | -2.158 |
| 07 | -1.417 | -2.158 | -2.158 | 1.26 |
| 08 | 0.325 | -1.417 | 0.814 | -2.158 |
| 09 | -1.721 | 0.278 | 0.493 | -0.148 |
| 10 | -0.701 | -1.417 | -1.185 | 1.084 |
| 11 | -0.838 | -2.158 | -0.996 | 1.126 |
| 12 | 0.065 | -0.581 | -0.011 | 0.325 |