Model info
| Transcription factor | Nkx2-1 | ||||||||
| Model | NKX21_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Consensus | bYSRAGdRbh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 85 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-2.1{3.1.2.14} | ||||||||
| MGI | 108067 | ||||||||
| EntrezGene | 21869 | ||||||||
| UniProt ID | NKX21_MOUSE | ||||||||
| UniProt AC | P50220 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.993 | 40.41 | 23.477 | 13.451 |
| 02 | 9.803 | 20.497 | 3.231 | 51.801 |
| 03 | 0.139 | 53.499 | 18.966 | 12.727 |
| 04 | 58.29 | 5.152 | 19.523 | 2.367 |
| 05 | 85.332 | 0.0 | 0.0 | 0.0 |
| 06 | 1.003 | 0.0 | 84.329 | 0.0 |
| 07 | 11.836 | 3.147 | 31.999 | 38.349 |
| 08 | 14.148 | 0.0 | 59.041 | 12.142 |
| 09 | 5.264 | 44.587 | 16.403 | 19.077 |
| 10 | 17.267 | 24.062 | 11.028 | 32.974 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.902 | 0.615 | 0.091 | -0.433 |
| 02 | -0.721 | -0.038 | -1.643 | 0.858 |
| 03 | -2.887 | 0.889 | -0.111 | -0.484 |
| 04 | 0.973 | -1.276 | -0.084 | -1.864 |
| 05 | 1.348 | -3.005 | -3.005 | -3.005 |
| 06 | -2.362 | -3.005 | 1.337 | -3.005 |
| 07 | -0.55 | -1.662 | 0.389 | 0.564 |
| 08 | -0.386 | -3.005 | 0.986 | -0.527 |
| 09 | -1.259 | 0.711 | -0.248 | -0.106 |
| 10 | -0.2 | 0.115 | -0.615 | 0.418 |