Model info
Transcription factorNKX2-1
ModelNKX21_HUMAN.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length10
Quality
D
ConsensusbYSRAGdRbh
wAUC
Best AUC
Benchmark datasets
Aligned words85
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.1{3.1.2.14}
HGNC11825
EntrezGene7080
UniProt IDNKX21_HUMAN
UniProt ACP43699
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.1611
0.0005 5.7132
0.0001 6.753
PCM
ACGT
017.99340.4123.47713.451
029.80320.4973.23151.801
030.13953.49918.96612.727
0458.295.15219.5232.367
0585.3320.00.00.0
061.0030.084.3290.0
0711.8363.14731.99938.349
0814.1480.059.04112.142
095.26444.58716.40319.077
1017.26724.06211.02832.974
PWM
ACGT
01-0.9020.6150.091-0.433
02-0.721-0.038-1.6430.858
03-2.8870.889-0.111-0.484
040.973-1.276-0.084-1.864
051.348-3.005-3.005-3.005
06-2.362-3.0051.337-3.005
07-0.55-1.6620.3890.564
08-0.386-3.0050.986-0.527
09-1.2590.711-0.248-0.106
10-0.20.115-0.6150.418