Model info
Transcription factorNEUROG2
ModelNGN2_HUMAN.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHT-SELEX
Model length13
Quality
D
ConsensusMvCMYMTShYhhh
wAUC
Best AUC
Benchmark datasets
Aligned words271
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
HGNC13805
EntrezGene63973
UniProt IDNGN2_HUMAN
UniProt ACQ9H2A3
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9691
0.0005 5.6541
0.0001 7.0371
PCM
ACGT
01162.76641.92840.20726.715
02103.981119.20931.65116.777
0325.939231.1567.6076.915
04205.40548.5799.8547.78
0515.56642.1826.224207.645
06213.86832.5017.60717.641
072.07577.4640.0192.078
089.34362.928190.3578.99
0927.32279.90626.645137.743
1010.80796.5695.966158.275
1170.56741.49429.739129.816
1261.074107.40525.77777.361
1375.86479.99824.64891.107
PWM
ACGT
010.862-0.47-0.51-0.902
020.4190.554-0.74-1.338
03-0.931.211-2.04-2.12
041.093-0.327-1.818-2.021
05-1.407-0.464-2.2071.104
061.133-0.715-2.04-1.292
07-2.9930.129-3.9011.027
08-1.864-0.0751.018-1.898
09-0.8810.16-0.9050.697
10-1.7360.346-2.2410.835
110.038-0.48-0.80.638
12-0.1040.451-0.9360.128
130.1090.161-0.9790.289