Model info
| Transcription factor | Nfya | ||||||||
| Model | NFYA_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | S | ||||||||
| Consensus | hbSYSATTGGYYv | ||||||||
| wAUC | 0.6207241796019873 | ||||||||
| Best AUC | 0.6207241796019873 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 1318 | ||||||||
| TF family | Heteromeric CCAAT-binding factors{4.2.1} | ||||||||
| TF subfamily | NF-YA (CP1A, CBF-B){4.2.1.0.1} | ||||||||
| MGI | 97316 | ||||||||
| EntrezGene | 18044 | ||||||||
| UniProt ID | NFYA_MOUSE | ||||||||
| UniProt AC | P23708 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 193.111 | 528.017 | 86.025 | 501.588 |
| 02 | 91.124 | 244.267 | 438.696 | 534.653 |
| 03 | 90.638 | 836.818 | 230.342 | 150.942 |
| 04 | 19.019 | 401.807 | 70.497 | 817.417 |
| 05 | 64.87 | 388.461 | 742.598 | 112.811 |
| 06 | 1278.263 | 10.633 | 7.534 | 12.311 |
| 07 | 3.796 | 5.757 | 6.356 | 1292.833 |
| 08 | 12.035 | 3.58 | 6.076 | 1287.05 |
| 09 | 0.767 | 4.108 | 1294.658 | 9.207 |
| 10 | 3.577 | 16.853 | 1287.482 | 0.829 |
| 11 | 89.379 | 665.366 | 72.097 | 481.898 |
| 12 | 50.84 | 511.922 | 114.318 | 631.659 |
| 13 | 358.965 | 270.482 | 555.212 | 124.082 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.523 | 0.477 | -1.321 | 0.425 |
| 02 | -1.264 | -0.29 | 0.292 | 0.489 |
| 03 | -1.27 | 0.936 | -0.349 | -0.767 |
| 04 | -2.76 | 0.204 | -1.515 | 0.912 |
| 05 | -1.596 | 0.171 | 0.817 | -1.054 |
| 06 | 1.359 | -3.276 | -3.563 | -3.149 |
| 07 | -4.075 | -3.774 | -3.698 | 1.37 |
| 08 | -3.169 | -4.114 | -3.733 | 1.366 |
| 09 | -4.855 | -4.021 | 1.371 | -3.398 |
| 10 | -4.115 | -2.87 | 1.366 | -4.832 |
| 11 | -1.283 | 0.707 | -1.493 | 0.385 |
| 12 | -1.833 | 0.446 | -1.041 | 0.655 |
| 13 | 0.092 | -0.189 | 0.527 | -0.961 |