Model info
| Transcription factor | Nfya | ||||||||
| Model | NFYA_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 21 | ||||||||
| Quality | D | ||||||||
| Consensus | YKSYSATTKKYYvdbdbbbbY | ||||||||
| wAUC | 0.7330768639727392 | ||||||||
| Best AUC | 0.7330768639727391 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 482 | ||||||||
| TF family | Heteromeric CCAAT-binding factors{4.2.1} | ||||||||
| TF subfamily | NF-YA (CP1A, CBF-B){4.2.1.0.1} | ||||||||
| MGI | 97316 | ||||||||
| EntrezGene | 18044 | ||||||||
| UniProt ID | NFYA_MOUSE | ||||||||
| UniProt AC | P23708 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 31.444 | 130.419 | 38.516 | 281.622 |
| 02 | 19.549 | 73.011 | 77.138 | 312.302 |
| 03 | 21.117 | 335.604 | 68.659 | 56.62 |
| 04 | 8.157 | 89.393 | 26.099 | 358.351 |
| 05 | 13.321 | 298.886 | 145.39 | 24.403 |
| 06 | 399.121 | 46.767 | 3.864 | 32.248 |
| 07 | 8.306 | 20.678 | 41.385 | 411.632 |
| 08 | 1.789 | 7.291 | 28.807 | 444.114 |
| 09 | 9.436 | 30.185 | 258.589 | 183.79 |
| 10 | 2.805 | 12.503 | 268.712 | 197.979 |
| 11 | 36.659 | 307.316 | 22.492 | 115.533 |
| 12 | 19.737 | 273.063 | 21.678 | 167.522 |
| 13 | 194.917 | 77.007 | 171.365 | 38.71 |
| 14 | 123.616 | 33.181 | 98.209 | 226.994 |
| 15 | 46.829 | 89.715 | 233.373 | 112.083 |
| 16 | 188.22 | 67.544 | 123.633 | 102.603 |
| 17 | 48.952 | 113.923 | 81.871 | 237.254 |
| 18 | 44.708 | 106.381 | 94.541 | 236.37 |
| 19 | 40.833 | 76.498 | 111.204 | 253.465 |
| 20 | 33.502 | 108.485 | 114.607 | 225.406 |
| 21 | 38.071 | 289.002 | 69.22 | 85.706 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.308 | 0.078 | -1.114 | 0.842 |
| 02 | -1.755 | -0.493 | -0.439 | 0.945 |
| 03 | -1.684 | 1.016 | -0.553 | -0.741 |
| 04 | -2.532 | -0.294 | -1.485 | 1.081 |
| 05 | -2.105 | 0.901 | 0.186 | -1.548 |
| 06 | 1.189 | -0.927 | -3.116 | -1.284 |
| 07 | -2.517 | -1.703 | -1.045 | 1.219 |
| 08 | -3.6 | -2.626 | -1.392 | 1.295 |
| 09 | -2.408 | -1.347 | 0.757 | 0.418 |
| 10 | -3.334 | -2.162 | 0.795 | 0.492 |
| 11 | -1.161 | 0.929 | -1.625 | -0.042 |
| 12 | -1.747 | 0.811 | -1.659 | 0.326 |
| 13 | 0.476 | -0.441 | 0.348 | -1.109 |
| 14 | 0.025 | -1.257 | -0.202 | 0.627 |
| 15 | -0.925 | -0.291 | 0.655 | -0.071 |
| 16 | 0.441 | -0.569 | 0.025 | -0.159 |
| 17 | -0.882 | -0.055 | -0.381 | 0.671 |
| 18 | -0.97 | -0.123 | -0.239 | 0.668 |
| 19 | -1.058 | -0.447 | -0.079 | 0.737 |
| 20 | -1.248 | -0.104 | -0.049 | 0.62 |
| 21 | -1.125 | 0.867 | -0.545 | -0.336 |