Model info
| Transcription factor | NFYA | ||||||||
| Model | NFYA_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Consensus | nbRRCCAATSRRvdvbvdvvdn | ||||||||
| wAUC | 0.9554607775680722 | ||||||||
| Best AUC | 0.9737737889127603 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 506 | ||||||||
| TF family | Heteromeric CCAAT-binding factors{4.2.1} | ||||||||
| TF subfamily | NF-YA (CP1A, CBF-B){4.2.1.0.1} | ||||||||
| HGNC | 7804 | ||||||||
| EntrezGene | 4800 | ||||||||
| UniProt ID | NFYA_HUMAN | ||||||||
| UniProt AC | P23511 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 10.093 | 19.663 | 34.628 | 12.489 | 11.043 | 60.182 | 20.162 | 73.228 | 14.016 | 63.414 | 27.28 | 32.009 | 11.379 | 62.635 | 25.406 | 22.373 |
| 02 | 22.263 | 2.039 | 22.229 | 0.0 | 107.69 | 18.132 | 70.972 | 9.1 | 39.174 | 8.714 | 57.753 | 1.835 | 43.974 | 6.282 | 88.63 | 1.212 |
| 03 | 37.329 | 7.718 | 146.437 | 21.617 | 20.905 | 0.0 | 9.592 | 4.67 | 84.28 | 19.432 | 115.973 | 19.898 | 2.887 | 0.0 | 3.813 | 5.447 |
| 04 | 0.864 | 144.537 | 0.0 | 0.0 | 0.0 | 19.025 | 0.0 | 8.125 | 0.833 | 274.146 | 0.837 | 0.0 | 0.0 | 51.633 | 0.0 | 0.0 |
| 05 | 0.0 | 1.697 | 0.0 | 0.0 | 4.088 | 479.172 | 2.778 | 3.303 | 0.0 | 0.837 | 0.0 | 0.0 | 0.92 | 7.205 | 0.0 | 0.0 |
| 06 | 5.009 | 0.0 | 0.0 | 0.0 | 477.734 | 0.0 | 0.0 | 11.176 | 2.778 | 0.0 | 0.0 | 0.0 | 3.303 | 0.0 | 0.0 | 0.0 |
| 07 | 471.001 | 6.9 | 10.922 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 9.146 | 0.0 | 0.0 | 2.031 |
| 08 | 2.205 | 1.889 | 1.915 | 474.138 | 0.0 | 0.0 | 0.0 | 6.9 | 0.0 | 1.861 | 1.944 | 7.117 | 0.9 | 0.0 | 0.0 | 1.131 |
| 09 | 0.0 | 3.105 | 0.0 | 0.0 | 1.861 | 0.0 | 0.897 | 0.992 | 0.0 | 0.802 | 3.057 | 0.0 | 54.746 | 246.612 | 175.778 | 12.149 |
| 10 | 11.239 | 0.903 | 44.465 | 0.0 | 183.785 | 14.55 | 50.235 | 1.949 | 72.659 | 0.0 | 105.108 | 1.966 | 5.995 | 0.0 | 7.146 | 0.0 |
| 11 | 43.331 | 37.913 | 182.237 | 10.196 | 5.833 | 2.875 | 3.055 | 3.689 | 29.832 | 31.425 | 135.06 | 10.637 | 0.0 | 0.86 | 3.055 | 0.0 |
| 12 | 46.635 | 13.235 | 15.924 | 3.202 | 38.949 | 10.112 | 17.488 | 6.525 | 163.205 | 73.355 | 62.651 | 24.196 | 9.271 | 2.749 | 12.503 | 0.0 |
| 13 | 98.3 | 14.062 | 124.353 | 21.345 | 30.558 | 3.944 | 50.068 | 14.883 | 45.848 | 8.038 | 49.835 | 4.843 | 9.3 | 4.622 | 14.893 | 5.108 |
| 14 | 28.596 | 22.193 | 113.218 | 19.998 | 3.598 | 4.522 | 20.625 | 1.922 | 60.301 | 83.16 | 77.117 | 18.57 | 2.863 | 8.968 | 26.958 | 7.39 |
| 15 | 21.759 | 27.254 | 31.16 | 15.186 | 17.158 | 35.59 | 40.754 | 25.341 | 28.021 | 117.365 | 61.243 | 31.288 | 6.962 | 10.273 | 23.164 | 7.481 |
| 16 | 22.482 | 15.363 | 28.683 | 7.374 | 34.253 | 64.228 | 60.092 | 31.908 | 38.1 | 62.841 | 40.707 | 14.673 | 8.032 | 32.637 | 31.724 | 6.903 |
| 17 | 42.063 | 4.895 | 45.421 | 10.49 | 51.832 | 22.332 | 56.705 | 44.2 | 52.278 | 36.912 | 57.492 | 14.523 | 8.355 | 12.81 | 30.827 | 8.866 |
| 18 | 16.836 | 20.842 | 114.151 | 2.698 | 13.01 | 25.247 | 24.739 | 13.953 | 43.924 | 54.652 | 85.768 | 6.101 | 9.007 | 24.242 | 38.424 | 6.406 |
| 19 | 22.824 | 9.935 | 42.87 | 7.147 | 23.712 | 40.537 | 44.962 | 15.772 | 75.449 | 65.692 | 87.131 | 34.81 | 4.905 | 6.199 | 13.059 | 4.996 |
| 20 | 35.853 | 6.8 | 75.009 | 9.227 | 31.539 | 12.528 | 31.042 | 47.254 | 48.135 | 24.138 | 86.514 | 29.234 | 8.343 | 8.446 | 36.073 | 9.863 |
| 21 | 33.239 | 19.875 | 41.701 | 29.055 | 1.891 | 18.091 | 9.488 | 22.442 | 55.414 | 63.599 | 85.767 | 23.859 | 6.176 | 27.84 | 14.414 | 47.148 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -1.105 | -0.456 | 0.101 | -0.899 | -1.018 | 0.649 | -0.432 | 0.844 | -0.787 | 0.701 | -0.134 | 0.024 | -0.989 | 0.689 | -0.204 | -0.329 |
| 02 | -0.334 | -2.567 | -0.336 | -4.4 | 1.228 | -0.535 | 0.813 | -1.204 | 0.224 | -1.246 | 0.609 | -2.655 | 0.338 | -1.557 | 1.034 | -2.984 |
| 03 | 0.176 | -1.362 | 1.535 | -0.363 | -0.396 | -4.4 | -1.154 | -1.833 | 0.984 | -0.468 | 1.302 | -0.444 | -2.268 | -4.4 | -2.019 | -1.69 |
| 04 | -3.23 | 1.522 | -4.4 | -4.4 | -4.4 | -0.488 | -4.4 | -1.313 | -3.254 | 2.161 | -3.251 | -4.4 | -4.4 | 0.497 | -4.4 | -4.4 |
| 05 | -4.4 | -2.72 | -4.4 | -4.4 | -1.955 | 2.718 | -2.302 | -2.148 | -4.4 | -3.251 | -4.4 | -4.4 | -3.185 | -1.427 | -4.4 | -4.4 |
| 06 | -1.769 | -4.4 | -4.4 | -4.4 | 2.715 | -4.4 | -4.4 | -1.006 | -2.302 | -4.4 | -4.4 | -4.4 | -2.148 | -4.4 | -4.4 | -4.4 |
| 07 | 2.701 | -1.468 | -1.029 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -1.2 | -4.4 | -4.4 | -2.571 |
| 08 | -2.501 | -2.631 | -2.62 | 2.708 | -4.4 | -4.4 | -4.4 | -1.468 | -4.4 | -2.644 | -2.608 | -1.439 | -3.201 | -4.4 | -4.4 | -3.036 |
| 09 | -4.4 | -2.203 | -4.4 | -4.4 | -2.644 | -4.4 | -3.203 | -3.132 | -4.4 | -3.28 | -2.217 | -4.4 | 0.555 | 2.055 | 1.717 | -0.926 |
| 10 | -1.001 | -3.199 | 0.349 | -4.4 | 1.762 | -0.75 | 0.47 | -2.605 | 0.837 | -4.4 | 1.204 | -2.598 | -1.601 | -4.4 | -1.435 | -4.4 |
| 11 | 0.323 | 0.191 | 1.753 | -1.095 | -1.626 | -2.272 | -2.218 | -2.049 | -0.046 | 0.006 | 1.454 | -1.054 | -4.4 | -3.232 | -2.218 | -4.4 |
| 12 | 0.396 | -0.843 | -0.662 | -2.176 | 0.218 | -1.103 | -0.571 | -1.521 | 1.643 | 0.846 | 0.689 | -0.252 | -1.186 | -2.311 | -0.898 | -4.4 |
| 13 | 1.138 | -0.784 | 1.372 | -0.376 | -0.022 | -1.988 | 0.467 | -0.728 | 0.379 | -1.323 | 0.462 | -1.8 | -1.183 | -1.843 | -0.728 | -1.75 |
| 14 | -0.088 | -0.337 | 1.278 | -0.44 | -2.072 | -1.863 | -0.409 | -2.617 | 0.651 | 0.971 | 0.896 | -0.512 | -2.275 | -1.218 | -0.146 | -1.403 |
| 15 | -0.357 | -0.135 | -0.003 | -0.709 | -0.59 | 0.129 | 0.263 | -0.207 | -0.108 | 1.314 | 0.667 | 0.001 | -1.46 | -1.088 | -0.295 | -1.391 |
| 16 | -0.325 | -0.697 | -0.085 | -1.405 | 0.091 | 0.714 | 0.648 | 0.021 | 0.196 | 0.692 | 0.262 | -0.742 | -1.324 | 0.043 | 0.015 | -1.468 |
| 17 | 0.294 | -1.79 | 0.37 | -1.068 | 0.501 | -0.331 | 0.59 | 0.343 | 0.51 | 0.165 | 0.604 | -0.752 | -1.286 | -0.874 | -0.013 | -1.229 |
| 18 | -0.608 | -0.399 | 1.287 | -2.327 | -0.859 | -0.21 | -0.23 | -0.791 | 0.337 | 0.554 | 1.002 | -1.584 | -1.214 | -0.25 | 0.204 | -1.538 |
| 19 | -0.31 | -1.12 | 0.313 | -1.435 | -0.272 | 0.257 | 0.36 | -0.672 | 0.874 | 0.737 | 1.017 | 0.107 | -1.788 | -1.569 | -0.856 | -1.771 |
| 20 | 0.136 | -1.482 | 0.868 | -1.191 | 0.009 | -0.896 | -0.007 | 0.409 | 0.428 | -0.255 | 1.01 | -0.066 | -1.287 | -1.276 | 0.142 | -1.127 |
| 21 | 0.061 | -0.446 | 0.285 | -0.072 | -2.63 | -0.538 | -1.164 | -0.326 | 0.567 | 0.704 | 1.002 | -0.266 | -1.573 | -0.114 | -0.76 | 0.407 |