Model info
| Transcription factor | NFKB1 | ||||||||
| Model | NFKB1_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Consensus | dGGRAAKYCCC | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 185 | ||||||||
| TF family | NF-kappaB-related factors{6.1.1} | ||||||||
| TF subfamily | NF-kappaB p50 subunit-like factors{6.1.1.1} | ||||||||
| HGNC | 7794 | ||||||||
| EntrezGene | 4790 | ||||||||
| UniProt ID | NFKB1_HUMAN | ||||||||
| UniProt AC | P19838 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.944 | 25.596 | 94.463 | 34.997 |
| 02 | 3.382 | 3.261 | 172.856 | 2.5 |
| 03 | 1.324 | 4.485 | 168.936 | 7.255 |
| 04 | 70.34 | 1.912 | 109.748 | 0.0 |
| 05 | 141.935 | 7.874 | 32.1 | 0.092 |
| 06 | 171.03 | 4.547 | 6.423 | 0.0 |
| 07 | 24.206 | 4.914 | 58.957 | 93.923 |
| 08 | 4.301 | 105.987 | 1.912 | 69.799 |
| 09 | 6.63 | 168.323 | 1.691 | 5.356 |
| 10 | 1.912 | 174.512 | 0.662 | 4.914 |
| 11 | 12.436 | 152.007 | 7.142 | 10.414 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.505 | -0.554 | 0.716 | -0.254 |
| 02 | -2.302 | -2.328 | 1.314 | -2.511 |
| 03 | -2.881 | -2.09 | 1.291 | -1.699 |
| 04 | 0.426 | -2.679 | 0.864 | -3.583 |
| 05 | 1.119 | -1.629 | -0.337 | -3.515 |
| 06 | 1.304 | -2.08 | -1.802 | -3.583 |
| 07 | -0.607 | -2.019 | 0.253 | 0.71 |
| 08 | -2.123 | 0.83 | -2.679 | 0.418 |
| 09 | -1.775 | 1.288 | -2.75 | -1.95 |
| 10 | -2.679 | 1.324 | -3.172 | -2.019 |
| 11 | -1.226 | 1.187 | -1.713 | -1.385 |