Model info
Transcription factorNFIC
ModelNFIC_HUMAN.H10MO.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length17
Quality
A
ConsensushYYTGGCWbnndbYCMd
wAUC
0.8185734631144661
Best AUC
0.8360354722373089
Benchmark datasets4
Aligned words500
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1C (NF-IC){7.1.2.0.3}
HGNC7786
EntrezGene4782
UniProt IDNFIC_HUMAN
UniProt ACP08651
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2321
0.0005 5.2111
0.0001 7.1991
PCM
ACGT
01106.211110.07476.745206.97
0220.615280.59852.249146.538
039.348192.8167.322290.514
0412.0356.45813.87467.637
052.72.07492.2832.947
061.8796.344488.1923.585
0741.249442.73912.3673.645
08261.32148.30419.226171.15
0976.973138.702204.33479.991
10144.871146.09799.071109.961
11112.873144.356165.89976.872
12167.24150.16110.121172.478
1325.31978.214240.994155.473
1443.065378.6029.77568.558
1520.864442.73312.95523.448
16256.252175.65517.20750.886
17222.6965.906142.2569.154
PWM
ACGT
01-0.161-0.125-0.480.499
02-1.7420.802-0.8550.157
03-2.4520.429-2.6570.836
04-2.231-2.76-2.1051.31
05-3.393-3.5531.362-3.336
06-3.607-2.7741.353-3.204
07-1.0841.256-2.207-3.192
080.731-0.932-1.8070.311
09-0.4770.1030.487-0.44
100.1460.154-0.229-0.127
11-0.1010.1420.28-0.479
120.288-0.895-0.1250.319
13-1.55-0.4620.6510.216
14-1.0431.1-2.413-0.591
15-1.7311.256-2.166-1.622
160.7120.337-1.909-0.881
170.572-0.6290.128-0.582