Model info
| Transcription factor | NEUROD2 | ||||||||
| Model | NDF2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | dbSRWATKdbv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 125 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| HGNC | 7763 | ||||||||
| EntrezGene | 4761 | ||||||||
| UniProt ID | NDF2_HUMAN | ||||||||
| UniProt AC | Q15784 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 31.0 | 13.0 | 50.0 | 27.0 |
| 02 | 17.25 | 41.25 | 39.25 | 23.25 |
| 03 | 8.0 | 69.0 | 38.0 | 6.0 |
| 04 | 60.25 | 6.25 | 52.25 | 2.25 |
| 05 | 28.0 | 1.0 | 8.0 | 84.0 |
| 06 | 89.0 | 0.0 | 32.0 | 0.0 |
| 07 | 0.0 | 1.0 | 33.0 | 87.0 |
| 08 | 10.75 | 3.75 | 94.75 | 11.75 |
| 09 | 24.75 | 18.75 | 47.75 | 29.75 |
| 10 | 15.75 | 17.75 | 16.75 | 70.75 |
| 11 | 22.5 | 31.5 | 51.5 | 15.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.024 | -0.795 | 0.487 | -0.109 |
| 02 | -0.533 | 0.3 | 0.252 | -0.252 |
| 03 | -1.229 | 0.803 | 0.22 | -1.474 |
| 04 | 0.67 | -1.44 | 0.53 | -2.21 |
| 05 | -0.074 | -2.66 | -1.229 | 0.997 |
| 06 | 1.054 | -3.267 | 0.054 | -3.267 |
| 07 | -3.267 | -2.66 | 0.084 | 1.031 |
| 08 | -0.968 | -1.849 | 1.115 | -0.887 |
| 09 | -0.192 | -0.455 | 0.442 | -0.016 |
| 10 | -0.618 | -0.507 | -0.561 | 0.828 |
| 11 | -0.283 | 0.039 | 0.516 | -0.633 |