Model info
| Transcription factor | NEUROD1 | ||||||||
| Model | NDF1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Consensus | bRRCAGRTGdbM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 27 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| HGNC | 7762 | ||||||||
| EntrezGene | 4760 | ||||||||
| UniProt ID | NDF1_HUMAN | ||||||||
| UniProt AC | Q13562 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.118 | 11.176 | 5.412 | 5.176 |
| 02 | 7.412 | 1.176 | 17.294 | 0.0 |
| 03 | 7.176 | 3.294 | 15.412 | 0.0 |
| 04 | 0.0 | 25.882 | 0.0 | 0.0 |
| 05 | 24.0 | 0.0 | 0.0 | 1.882 |
| 06 | 1.176 | 3.765 | 20.941 | 0.0 |
| 07 | 11.176 | 4.824 | 9.882 | 0.0 |
| 08 | 0.0 | 0.941 | 0.0 | 24.941 |
| 09 | 0.0 | 0.0 | 25.882 | 0.0 |
| 10 | 3.059 | 1.882 | 13.412 | 7.529 |
| 11 | 2.0 | 12.353 | 6.235 | 5.294 |
| 12 | 6.029 | 14.265 | 5.324 | 0.265 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.39 | 0.498 | -0.157 | -0.196 |
| 02 | 0.122 | -1.298 | 0.911 | -2.192 |
| 03 | 0.092 | -0.573 | 0.801 | -2.192 |
| 04 | -2.192 | 1.299 | -2.192 | -2.192 |
| 05 | 1.226 | -2.192 | -2.192 | -0.994 |
| 06 | -1.298 | -0.464 | 1.094 | -2.192 |
| 07 | 0.498 | -0.256 | 0.384 | -2.192 |
| 08 | -2.192 | -1.423 | -2.192 | 1.263 |
| 09 | -2.192 | -2.192 | 1.299 | -2.192 |
| 10 | -0.632 | -0.994 | 0.669 | 0.136 |
| 11 | -0.951 | 0.592 | -0.033 | -0.176 |
| 12 | -0.062 | 0.728 | -0.171 | -1.91 |