Model info
| Transcription factor | Nanog | ||||||||
| Model | NANOG_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 8 | ||||||||
| Quality | S | ||||||||
| Consensus | TTTAATGb | ||||||||
| wAUC | 0.49859151249281575 | ||||||||
| Best AUC | 0.5817741120218001 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 5 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NANOG{3.1.2.12} | ||||||||
| MGI | 1919200 | ||||||||
| EntrezGene | 71950 | ||||||||
| UniProt ID | NANOG_MOUSE | ||||||||
| UniProt AC | Q80Z64 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 0.0 | 1.957 | 3.043 |
| 02 | 0.0 | 0.0 | 0.0 | 5.0 |
| 03 | 0.0 | 0.0 | 1.087 | 3.913 |
| 04 | 5.0 | 0.0 | 0.0 | 0.0 |
| 05 | 5.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5.0 |
| 07 | 0.0 | 0.0 | 5.0 | 0.0 |
| 08 | 0.0 | 0.978 | 3.043 | 0.978 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.413 | -1.413 | 0.356 | 0.735 |
| 02 | -1.413 | -1.413 | -1.413 | 1.185 |
| 03 | -1.413 | -1.413 | -0.104 | 0.96 |
| 04 | 1.185 | -1.413 | -1.413 | -1.413 |
| 05 | 1.185 | -1.413 | -1.413 | -1.413 |
| 06 | -1.413 | -1.413 | -1.413 | 1.185 |
| 07 | -1.413 | -1.413 | 1.185 | -1.413 |
| 08 | -1.413 | -0.18 | 0.735 | -0.18 |