Model info
| Transcription factor | Nanog | ||||||||
| Model | NANOG_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Consensus | bbYWTTvWnWTKYWRAd | ||||||||
| wAUC | 0.782272397117236 | ||||||||
| Best AUC | 0.8499834054583915 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NANOG{3.1.2.12} | ||||||||
| MGI | 1919200 | ||||||||
| EntrezGene | 71950 | ||||||||
| UniProt ID | NANOG_MOUSE | ||||||||
| UniProt AC | Q80Z64 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 39.224 | 105.368 | 132.379 | 223.029 |
| 02 | 20.545 | 268.48 | 84.795 | 126.18 |
| 03 | 32.295 | 263.546 | 14.774 | 189.385 |
| 04 | 210.997 | 17.693 | 14.119 | 257.192 |
| 05 | 3.948 | 21.664 | 21.47 | 452.918 |
| 06 | 36.788 | 8.913 | 14.757 | 439.542 |
| 07 | 59.297 | 135.886 | 266.566 | 38.252 |
| 08 | 161.331 | 3.924 | 11.86 | 322.884 |
| 09 | 120.541 | 105.065 | 109.499 | 164.895 |
| 10 | 366.364 | 28.846 | 24.522 | 80.268 |
| 11 | 42.161 | 5.697 | 20.036 | 432.105 |
| 12 | 16.714 | 6.27 | 355.501 | 121.515 |
| 13 | 16.996 | 267.366 | 69.662 | 145.977 |
| 14 | 271.0 | 53.408 | 20.693 | 154.9 |
| 15 | 354.509 | 7.648 | 85.305 | 52.538 |
| 16 | 435.734 | 24.904 | 17.167 | 22.195 |
| 17 | 104.582 | 47.31 | 76.117 | 271.991 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.133 | -0.169 | 0.057 | 0.574 |
| 02 | -1.745 | 0.758 | -0.382 | 0.009 |
| 03 | -1.319 | 0.739 | -2.048 | 0.411 |
| 04 | 0.519 | -1.883 | -2.089 | 0.715 |
| 05 | -3.136 | -1.696 | -1.704 | 1.278 |
| 06 | -1.194 | -2.492 | -2.049 | 1.249 |
| 07 | -0.732 | 0.083 | 0.751 | -1.157 |
| 08 | 0.252 | -3.14 | -2.244 | 0.941 |
| 09 | -0.036 | -0.171 | -0.131 | 0.274 |
| 10 | 1.067 | -1.426 | -1.58 | -0.436 |
| 11 | -1.063 | -2.86 | -1.768 | 1.232 |
| 12 | -1.936 | -2.783 | 1.037 | -0.028 |
| 13 | -1.92 | 0.754 | -0.575 | 0.153 |
| 14 | 0.767 | -0.834 | -1.738 | 0.212 |
| 15 | 1.034 | -2.621 | -0.376 | -0.85 |
| 16 | 1.24 | -1.565 | -1.911 | -1.673 |
| 17 | -0.176 | -0.952 | -0.488 | 0.771 |