Model info
Transcription factorNanog
ModelNANOG_MOUSE.H10MO.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length17
Quality
A
ConsensusbbYWTTvWnWTKYWRAd
wAUC
0.782272397117236
Best AUC
0.8499834054583915
Benchmark datasets4
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
MGI1919200
EntrezGene71950
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2731
0.0005 5.1891
0.0001 7.0861
PCM
ACGT
0139.224105.368132.379223.029
0220.545268.4884.795126.18
0332.295263.54614.774189.385
04210.99717.69314.119257.192
053.94821.66421.47452.918
0636.7888.91314.757439.542
0759.297135.886266.56638.252
08161.3313.92411.86322.884
09120.541105.065109.499164.895
10366.36428.84624.52280.268
1142.1615.69720.036432.105
1216.7146.27355.501121.515
1316.996267.36669.662145.977
14271.053.40820.693154.9
15354.5097.64885.30552.538
16435.73424.90417.16722.195
17104.58247.3176.117271.991
PWM
ACGT
01-1.133-0.1690.0570.574
02-1.7450.758-0.3820.009
03-1.3190.739-2.0480.411
040.519-1.883-2.0890.715
05-3.136-1.696-1.7041.278
06-1.194-2.492-2.0491.249
07-0.7320.0830.751-1.157
080.252-3.14-2.2440.941
09-0.036-0.171-0.1310.274
101.067-1.426-1.58-0.436
11-1.063-2.86-1.7681.232
12-1.936-2.7831.037-0.028
13-1.920.754-0.5750.153
140.767-0.834-1.7380.212
151.034-2.621-0.376-0.85
161.24-1.565-1.911-1.673
17-0.176-0.952-0.4880.771