Model info
| Transcription factor | Nanog | ||||||||
| Model | NANOG_MOUSE.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Consensus | nbbYWTTvWnWTKYWRAdndnn | ||||||||
| wAUC | 0.7972551782413955 | ||||||||
| Best AUC | 0.8613327589831379 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 513 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NANOG{3.1.2.12} | ||||||||
| MGI | 1919200 | ||||||||
| EntrezGene | 71950 | ||||||||
| UniProt ID | NANOG_MOUSE | ||||||||
| UniProt AC | Q80Z64 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 7.927 | 20.642 | 35.539 | 25.338 | 11.057 | 25.966 | 4.886 | 65.537 | 11.518 | 23.838 | 44.179 | 64.264 | 7.615 | 32.788 | 34.988 | 83.917 |
| 02 | 1.793 | 16.968 | 11.714 | 7.642 | 6.335 | 68.481 | 4.355 | 24.063 | 6.822 | 68.059 | 25.355 | 19.356 | 9.898 | 105.796 | 54.949 | 68.414 |
| 03 | 0.0 | 10.719 | 3.015 | 11.114 | 24.38 | 110.932 | 2.085 | 121.907 | 5.59 | 50.827 | 7.794 | 32.163 | 3.779 | 71.782 | 11.627 | 32.286 |
| 04 | 11.725 | 1.882 | 5.98 | 14.162 | 102.674 | 6.712 | 4.151 | 130.722 | 16.626 | 2.026 | 0.0 | 5.869 | 83.462 | 8.023 | 10.666 | 95.319 |
| 05 | 2.763 | 5.038 | 10.22 | 196.466 | 0.0 | 2.871 | 0.0 | 15.772 | 0.0 | 1.891 | 6.052 | 12.854 | 6.941 | 9.951 | 4.828 | 224.352 |
| 06 | 4.83 | 0.0 | 0.0 | 4.875 | 1.037 | 0.928 | 0.0 | 17.787 | 1.907 | 0.979 | 1.815 | 16.399 | 32.798 | 10.056 | 11.882 | 394.707 |
| 07 | 6.306 | 10.669 | 22.621 | 0.975 | 5.143 | 2.983 | 0.0 | 3.837 | 4.058 | 2.824 | 4.813 | 2.002 | 36.322 | 119.548 | 246.224 | 31.675 |
| 08 | 21.372 | 0.96 | 4.07 | 25.427 | 78.735 | 3.158 | 1.914 | 52.218 | 52.395 | 1.874 | 4.814 | 214.575 | 12.885 | 1.07 | 1.896 | 22.638 |
| 09 | 53.077 | 28.286 | 54.542 | 29.481 | 0.953 | 2.075 | 1.063 | 2.971 | 3.941 | 0.0 | 2.858 | 5.894 | 76.923 | 64.505 | 50.997 | 122.433 |
| 10 | 118.645 | 4.307 | 3.903 | 8.039 | 62.394 | 2.147 | 3.181 | 27.144 | 87.042 | 7.048 | 2.905 | 12.465 | 98.764 | 25.252 | 14.924 | 21.839 |
| 11 | 21.744 | 3.728 | 10.504 | 330.869 | 8.142 | 4.127 | 1.157 | 25.328 | 0.948 | 1.07 | 0.0 | 22.895 | 1.066 | 2.062 | 0.885 | 65.473 |
| 12 | 2.887 | 1.138 | 21.869 | 6.006 | 1.898 | 1.027 | 0.0 | 8.062 | 0.0 | 0.0 | 8.142 | 4.405 | 8.864 | 4.105 | 317.455 | 114.141 |
| 13 | 0.968 | 9.789 | 0.945 | 1.948 | 0.0 | 2.968 | 1.137 | 2.165 | 12.053 | 192.884 | 46.025 | 96.503 | 4.096 | 71.085 | 18.052 | 39.38 |
| 14 | 14.078 | 0.0 | 0.0 | 3.039 | 148.751 | 34.586 | 1.868 | 91.522 | 32.948 | 3.964 | 12.931 | 16.316 | 63.209 | 14.884 | 5.852 | 56.052 |
| 15 | 191.985 | 2.231 | 57.034 | 7.736 | 18.846 | 0.951 | 0.0 | 33.638 | 17.473 | 1.107 | 2.07 | 0.0 | 116.058 | 2.094 | 32.508 | 16.27 |
| 16 | 309.542 | 13.017 | 13.772 | 8.03 | 5.275 | 0.0 | 0.0 | 1.107 | 78.39 | 5.867 | 1.947 | 5.409 | 50.66 | 3.02 | 1.891 | 2.073 |
| 17 | 93.584 | 39.658 | 65.716 | 244.908 | 7.08 | 7.871 | 0.0 | 6.953 | 4.932 | 0.931 | 1.849 | 9.898 | 0.0 | 1.923 | 1.043 | 13.654 |
| 18 | 22.097 | 19.705 | 16.342 | 47.452 | 14.725 | 14.511 | 0.996 | 20.151 | 18.826 | 18.449 | 16.157 | 15.176 | 37.694 | 37.843 | 110.038 | 89.839 |
| 19 | 25.704 | 8.124 | 40.306 | 19.207 | 46.074 | 11.127 | 3.299 | 30.008 | 55.531 | 23.098 | 40.211 | 24.694 | 29.386 | 16.176 | 51.24 | 75.815 |
| 20 | 58.831 | 33.503 | 44.039 | 20.322 | 20.503 | 18.913 | 5.079 | 14.03 | 48.47 | 42.768 | 19.546 | 24.272 | 53.295 | 38.301 | 30.933 | 27.196 |
| 21 | 36.497 | 36.461 | 82.007 | 26.134 | 32.032 | 46.002 | 5.806 | 49.645 | 19.991 | 31.41 | 28.864 | 19.332 | 11.343 | 16.514 | 29.56 | 28.403 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -1.336 | -0.408 | 0.127 | -0.207 | -1.017 | -0.183 | -1.792 | 0.734 | -0.977 | -0.267 | 0.343 | 0.715 | -1.374 | 0.047 | 0.112 | 0.98 |
| 02 | -2.674 | -0.6 | -0.961 | -1.371 | -1.549 | 0.778 | -1.898 | -0.258 | -1.479 | 0.772 | -0.206 | -0.472 | -1.124 | 1.211 | 0.559 | 0.777 |
| 03 | -4.4 | -1.047 | -2.229 | -1.012 | -0.245 | 1.258 | -2.549 | 1.352 | -1.666 | 0.482 | -1.352 | 0.028 | -2.027 | 0.825 | -0.968 | 0.032 |
| 04 | -0.96 | -2.634 | -1.603 | -0.777 | 1.181 | -1.494 | -1.942 | 1.422 | -0.62 | -2.573 | -4.4 | -1.621 | 0.975 | -1.325 | -1.052 | 1.107 |
| 05 | -2.306 | -1.763 | -1.093 | 1.828 | -4.4 | -2.273 | -4.4 | -0.672 | -4.4 | -2.63 | -1.592 | -0.871 | -1.462 | -1.118 | -1.803 | 1.961 |
| 06 | -1.802 | -4.4 | -4.4 | -1.794 | -3.1 | -3.18 | -4.4 | -0.554 | -2.623 | -3.142 | -2.664 | -0.634 | 0.048 | -1.108 | -0.947 | 2.525 |
| 07 | -1.553 | -1.051 | -0.318 | -3.145 | -1.744 | -2.239 | -4.4 | -2.013 | -1.962 | -2.287 | -1.805 | -2.583 | 0.149 | 1.333 | 2.053 | 0.013 |
| 08 | -0.374 | -3.155 | -1.96 | -0.203 | 0.917 | -2.189 | -2.621 | 0.508 | 0.512 | -2.638 | -1.805 | 1.916 | -0.869 | -3.077 | -2.628 | -0.318 |
| 09 | 0.525 | -0.098 | 0.552 | -0.058 | -3.16 | -2.553 | -3.082 | -2.243 | -1.989 | -4.4 | -2.277 | -1.617 | 0.893 | 0.718 | 0.485 | 1.356 |
| 10 | 1.325 | -1.908 | -1.998 | -1.323 | 0.685 | -2.524 | -2.182 | -0.139 | 1.016 | -1.448 | -2.263 | -0.901 | 1.142 | -0.21 | -0.726 | -0.353 |
| 11 | -0.357 | -2.039 | -1.066 | 2.349 | -1.311 | -1.947 | -3.019 | -0.207 | -3.164 | -3.077 | -4.4 | -0.307 | -3.08 | -2.558 | -3.213 | 0.733 |
| 12 | -2.268 | -3.032 | -0.352 | -1.599 | -2.627 | -3.107 | -4.4 | -1.32 | -4.4 | -4.4 | -1.311 | -1.887 | -1.229 | -1.952 | 2.307 | 1.286 |
| 13 | -3.149 | -1.134 | -3.167 | -2.606 | -4.4 | -2.243 | -3.032 | -2.517 | -0.933 | 1.81 | 0.383 | 1.119 | -1.954 | 0.815 | -0.54 | 0.229 |
| 14 | -0.783 | -4.4 | -4.4 | -2.222 | 1.551 | 0.1 | -2.641 | 1.066 | 0.052 | -1.984 | -0.865 | -0.639 | 0.698 | -0.728 | -1.623 | 0.579 |
| 15 | 1.805 | -2.492 | 0.596 | -1.359 | -0.498 | -3.162 | -4.4 | 0.073 | -0.572 | -3.052 | -2.555 | -4.4 | 1.303 | -2.545 | 0.039 | -0.641 |
| 16 | 2.282 | -0.859 | -0.804 | -1.324 | -1.72 | -4.4 | -4.4 | -3.052 | 0.912 | -1.621 | -2.606 | -1.697 | 0.478 | -2.228 | -2.631 | -2.554 |
| 17 | 1.089 | 0.236 | 0.737 | 2.048 | -1.444 | -1.343 | -4.4 | -1.461 | -1.783 | -3.178 | -2.649 | -1.124 | -4.4 | -2.616 | -3.096 | -0.812 |
| 18 | -0.342 | -0.454 | -0.637 | 0.413 | -0.739 | -0.753 | -3.129 | -0.432 | -0.499 | -0.519 | -0.648 | -0.709 | 0.185 | 0.189 | 1.25 | 1.048 |
| 19 | -0.193 | -1.313 | 0.252 | -0.479 | 0.384 | -1.011 | -2.149 | -0.04 | 0.57 | -0.298 | 0.249 | -0.232 | -0.061 | -0.647 | 0.49 | 0.879 |
| 20 | 0.627 | 0.069 | 0.339 | -0.424 | -0.415 | -0.494 | -1.756 | -0.786 | 0.435 | 0.31 | -0.462 | -0.249 | 0.529 | 0.201 | -0.01 | -0.137 |
| 21 | 0.153 | 0.152 | 0.957 | -0.176 | 0.024 | 0.383 | -1.631 | 0.458 | -0.44 | 0.005 | -0.078 | -0.473 | -0.992 | -0.627 | -0.055 | -0.094 |