Model info
| Transcription factor | NANOG | ||||||||
| Model | NANOG_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | nnnnnnbYWTTSWnWTKYWRWKn | ||||||||
| wAUC | 0.8480480440056917 | ||||||||
| Best AUC | 0.9265916647715333 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NANOG{3.1.2.12} | ||||||||
| HGNC | 20857 | ||||||||
| EntrezGene | 79923 | ||||||||
| UniProt ID | NANOG_HUMAN | ||||||||
| UniProt AC | Q9H9S0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 59.768 | 26.9 | 41.537 | 21.637 | 24.658 | 14.136 | 0.0 | 39.425 | 19.316 | 20.922 | 40.893 | 26.731 | 19.374 | 18.869 | 60.67 | 65.164 |
| 02 | 50.549 | 10.736 | 52.844 | 8.988 | 30.017 | 13.871 | 9.354 | 27.584 | 23.049 | 32.009 | 61.245 | 26.797 | 23.952 | 42.777 | 58.022 | 28.205 |
| 03 | 42.612 | 16.931 | 47.786 | 20.238 | 40.736 | 25.472 | 4.101 | 29.083 | 49.236 | 24.502 | 70.761 | 36.965 | 8.966 | 14.937 | 33.209 | 34.462 |
| 04 | 29.253 | 20.698 | 61.716 | 29.884 | 18.97 | 25.675 | 2.937 | 34.26 | 26.713 | 47.54 | 32.924 | 48.681 | 13.213 | 26.706 | 34.266 | 46.565 |
| 05 | 8.246 | 20.874 | 45.192 | 13.836 | 18.676 | 31.357 | 10.16 | 60.426 | 20.041 | 37.699 | 44.563 | 29.541 | 14.215 | 36.834 | 60.04 | 48.301 |
| 06 | 4.0 | 25.013 | 16.373 | 15.792 | 13.945 | 54.296 | 1.002 | 57.52 | 11.968 | 66.302 | 40.153 | 41.533 | 8.803 | 52.537 | 45.526 | 45.238 |
| 07 | 2.986 | 25.81 | 2.112 | 7.809 | 22.176 | 90.837 | 2.097 | 83.038 | 8.524 | 52.388 | 9.625 | 32.517 | 7.053 | 91.61 | 17.848 | 43.571 |
| 08 | 19.513 | 1.929 | 4.007 | 15.29 | 88.68 | 14.083 | 5.0 | 152.882 | 9.908 | 0.0 | 1.89 | 19.884 | 26.91 | 8.077 | 17.692 | 114.256 |
| 09 | 3.03 | 3.085 | 0.0 | 138.897 | 0.0 | 0.956 | 0.957 | 22.176 | 0.93 | 5.928 | 0.0 | 21.729 | 0.0 | 11.08 | 3.974 | 287.258 |
| 10 | 0.0 | 0.0 | 0.0 | 3.96 | 1.109 | 0.0 | 0.0 | 19.94 | 0.0 | 0.0 | 0.0 | 4.931 | 16.461 | 5.982 | 20.26 | 427.357 |
| 11 | 0.0 | 8.756 | 7.822 | 0.993 | 2.032 | 3.949 | 0.0 | 0.0 | 3.848 | 4.959 | 7.516 | 3.936 | 49.95 | 129.296 | 254.189 | 22.754 |
| 12 | 16.961 | 3.099 | 1.896 | 33.874 | 94.837 | 0.984 | 0.924 | 50.215 | 76.974 | 1.887 | 5.941 | 184.725 | 5.775 | 1.904 | 3.034 | 16.97 |
| 13 | 85.541 | 22.673 | 44.721 | 41.612 | 0.968 | 0.0 | 0.0 | 6.906 | 2.941 | 0.0 | 4.888 | 3.966 | 37.35 | 79.501 | 37.604 | 131.328 |
| 14 | 113.825 | 5.161 | 3.992 | 3.821 | 75.314 | 1.975 | 1.087 | 23.799 | 59.086 | 4.136 | 8.471 | 15.522 | 135.601 | 12.264 | 12.999 | 22.949 |
| 15 | 60.57 | 8.805 | 11.764 | 302.686 | 6.02 | 0.927 | 1.122 | 15.466 | 1.105 | 2.706 | 2.089 | 20.648 | 4.86 | 0.0 | 2.873 | 58.357 |
| 16 | 11.887 | 3.067 | 47.447 | 10.155 | 2.041 | 0.0 | 6.491 | 3.907 | 2.984 | 0.0 | 13.846 | 1.018 | 0.947 | 7.796 | 318.087 | 70.328 |
| 17 | 1.13 | 14.762 | 0.0 | 1.966 | 0.0 | 6.921 | 0.0 | 3.942 | 13.831 | 247.301 | 44.246 | 80.494 | 2.937 | 37.932 | 4.03 | 40.508 |
| 18 | 10.866 | 0.0 | 0.0 | 7.032 | 208.037 | 2.878 | 1.932 | 94.069 | 27.143 | 3.036 | 2.014 | 16.083 | 86.602 | 3.109 | 2.925 | 34.273 |
| 19 | 224.839 | 11.066 | 69.152 | 27.59 | 5.934 | 0.92 | 0.0 | 2.169 | 4.035 | 0.0 | 1.891 | 0.946 | 92.808 | 5.754 | 49.916 | 2.979 |
| 20 | 260.391 | 9.933 | 20.808 | 36.484 | 10.793 | 3.058 | 1.878 | 2.01 | 99.501 | 13.917 | 1.214 | 6.326 | 14.106 | 5.108 | 3.873 | 10.598 |
| 21 | 53.03 | 25.047 | 58.964 | 247.75 | 7.857 | 3.191 | 0.0 | 20.969 | 5.01 | 3.815 | 6.232 | 12.716 | 1.022 | 15.513 | 18.814 | 20.069 |
| 22 | 20.267 | 7.066 | 20.828 | 18.758 | 17.541 | 7.692 | 3.018 | 19.316 | 10.512 | 25.581 | 17.998 | 29.919 | 42.856 | 37.52 | 135.213 | 85.915 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.643 | -0.148 | 0.282 | -0.362 | -0.234 | -0.779 | -4.4 | 0.23 | -0.474 | -0.395 | 0.266 | -0.154 | -0.471 | -0.496 | 0.657 | 0.728 |
| 02 | 0.476 | -1.045 | 0.52 | -1.216 | -0.04 | -0.797 | -1.178 | -0.123 | -0.3 | 0.024 | 0.667 | -0.152 | -0.262 | 0.311 | 0.613 | -0.101 |
| 03 | 0.307 | -0.603 | 0.42 | -0.428 | 0.262 | -0.202 | -1.953 | -0.071 | 0.45 | -0.24 | 0.81 | 0.166 | -1.218 | -0.725 | 0.06 | 0.097 |
| 04 | -0.065 | -0.406 | 0.674 | -0.044 | -0.491 | -0.194 | -2.253 | 0.091 | -0.155 | 0.415 | 0.052 | 0.439 | -0.844 | -0.155 | 0.091 | 0.395 |
| 05 | -1.299 | -0.397 | 0.365 | -0.799 | -0.507 | 0.003 | -1.098 | 0.653 | -0.437 | 0.186 | 0.351 | -0.056 | -0.773 | 0.163 | 0.647 | 0.431 |
| 06 | -1.975 | -0.22 | -0.635 | -0.671 | -0.792 | 0.547 | -3.125 | 0.604 | -0.94 | 0.746 | 0.248 | 0.281 | -1.236 | 0.515 | 0.372 | 0.366 |
| 07 | -2.238 | -0.189 | -2.538 | -1.351 | -0.338 | 1.059 | -2.544 | 0.97 | -1.267 | 0.512 | -1.15 | 0.039 | -1.447 | 1.067 | -0.551 | 0.329 |
| 08 | -0.464 | -2.614 | -1.974 | -0.702 | 1.035 | -0.782 | -1.77 | 1.578 | -1.123 | -4.4 | -2.631 | -0.445 | -0.148 | -1.318 | -0.56 | 1.287 |
| 09 | -2.225 | -2.209 | -4.4 | 1.482 | -4.4 | -3.158 | -3.158 | -0.338 | -3.178 | -1.611 | -4.4 | -0.358 | -4.4 | -1.015 | -1.981 | 2.207 |
| 10 | -4.4 | -4.4 | -4.4 | -1.985 | -3.05 | -4.4 | -4.4 | -0.442 | -4.4 | -4.4 | -4.4 | -1.783 | -0.63 | -1.603 | -0.427 | 2.604 |
| 11 | -4.4 | -1.241 | -1.349 | -3.132 | -2.57 | -1.987 | -4.4 | -4.4 | -2.011 | -1.778 | -1.387 | -1.99 | 0.464 | 1.411 | 2.085 | -0.313 |
| 12 | -0.601 | -2.205 | -2.628 | 0.08 | 1.102 | -3.138 | -3.182 | 0.47 | 0.894 | -2.632 | -1.609 | 1.767 | -1.636 | -2.625 | -2.224 | -0.6 |
| 13 | 0.999 | -0.316 | 0.355 | 0.283 | -3.149 | -4.4 | -4.4 | -1.467 | -2.252 | -4.4 | -1.791 | -1.983 | 0.176 | 0.926 | 0.183 | 1.426 |
| 14 | 1.284 | -1.741 | -1.977 | -2.017 | 0.872 | -2.594 | -3.066 | -0.269 | 0.631 | -1.945 | -1.273 | -0.687 | 1.458 | -0.916 | -0.86 | -0.304 |
| 15 | 0.656 | -1.236 | -0.957 | 2.26 | -1.597 | -3.18 | -3.042 | -0.691 | -3.053 | -2.325 | -2.547 | -0.408 | -1.796 | -4.4 | -2.272 | 0.619 |
| 16 | -0.947 | -2.214 | 0.413 | -1.099 | -2.567 | -4.4 | -1.526 | -1.997 | -2.239 | -4.4 | -0.799 | -3.113 | -3.165 | -1.352 | 2.309 | 0.804 |
| 17 | -3.037 | -0.736 | -4.4 | -2.598 | -4.4 | -1.465 | -4.4 | -1.989 | -0.8 | 2.058 | 0.344 | 0.939 | -2.253 | 0.192 | -1.969 | 0.257 |
| 18 | -1.034 | -4.4 | -4.4 | -1.45 | 1.885 | -2.271 | -2.613 | 1.094 | -0.139 | -2.224 | -2.578 | -0.653 | 1.011 | -2.202 | -2.256 | 0.091 |
| 19 | 1.963 | -1.016 | 0.788 | -0.123 | -1.61 | -3.186 | -4.4 | -2.515 | -1.968 | -4.4 | -2.63 | -3.166 | 1.08 | -1.639 | 0.464 | -2.24 |
| 20 | 2.109 | -1.12 | -0.401 | 0.153 | -1.04 | -2.217 | -2.636 | -2.579 | 1.15 | -0.794 | -2.983 | -1.55 | -0.781 | -1.75 | -2.005 | -1.058 |
| 21 | 0.524 | -0.218 | 0.629 | 2.06 | -1.345 | -2.179 | -4.4 | -0.393 | -1.768 | -2.018 | -1.564 | -0.881 | -3.11 | -0.688 | -0.499 | -0.436 |
| 22 | -0.426 | -1.446 | -0.4 | -0.502 | -0.568 | -1.365 | -2.229 | -0.474 | -1.066 | -0.197 | -0.543 | -0.043 | 0.312 | 0.181 | 1.455 | 1.003 |