Model info
| Transcription factor | Myod1 | ||||||||
| Model | MYOD1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Consensus | vCAGCTGYYbYhbbY | ||||||||
| wAUC | 0.9231358015382102 | ||||||||
| Best AUC | 0.9231358015382103 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | MyoD / ASC-related factors{1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors{1.2.2.1} | ||||||||
| MGI | 97275 | ||||||||
| EntrezGene | 17927 | ||||||||
| UniProt ID | MYOD1_MOUSE | ||||||||
| UniProt AC | P10085 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 62.155 | 141.951 | 251.579 | 44.315 |
| 02 | 2.785 | 497.215 | 0.0 | 0.0 |
| 03 | 494.167 | 0.939 | 1.012 | 3.882 |
| 04 | 1.144 | 102.408 | 391.42 | 5.027 |
| 05 | 0.938 | 496.044 | 0.0 | 3.018 |
| 06 | 0.0 | 0.98 | 0.0 | 499.02 |
| 07 | 0.0 | 3.954 | 496.046 | 0.0 |
| 08 | 0.902 | 192.757 | 21.997 | 284.345 |
| 09 | 2.004 | 239.396 | 41.233 | 217.367 |
| 10 | 67.659 | 218.156 | 135.991 | 78.194 |
| 11 | 34.835 | 298.72 | 56.678 | 109.767 |
| 12 | 83.398 | 152.622 | 61.392 | 202.587 |
| 13 | 51.966 | 133.064 | 236.548 | 78.422 |
| 14 | 52.708 | 204.202 | 117.64 | 125.45 |
| 15 | 31.651 | 292.123 | 82.958 | 93.269 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.686 | 0.126 | 0.693 | -1.015 |
| 02 | -3.373 | 1.371 | -4.4 | -4.4 |
| 03 | 1.365 | -3.927 | -3.898 | -3.148 |
| 04 | -3.848 | -0.197 | 1.133 | -2.956 |
| 05 | -3.928 | 1.369 | -4.4 | -3.321 |
| 06 | -4.4 | -3.911 | -4.4 | 1.375 |
| 07 | -4.4 | -3.135 | 1.369 | -4.4 |
| 08 | -3.942 | 0.429 | -1.682 | 0.815 |
| 09 | -3.572 | 0.644 | -1.084 | 0.548 |
| 10 | -0.603 | 0.552 | 0.083 | -0.462 |
| 11 | -1.246 | 0.864 | -0.776 | -0.128 |
| 12 | -0.399 | 0.197 | -0.698 | 0.478 |
| 13 | -0.861 | 0.062 | 0.632 | -0.459 |
| 14 | -0.847 | 0.486 | -0.06 | 0.004 |
| 15 | -1.338 | 0.842 | -0.404 | -0.289 |