Model info
| Transcription factor | MYOD1 | ||||||||
| Model | MYOD1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | bCASCTGYY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 77 | ||||||||
| TF family | MyoD / ASC-related factors{1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors{1.2.2.1} | ||||||||
| HGNC | 7611 | ||||||||
| EntrezGene | 4654 | ||||||||
| UniProt ID | MYOD1_HUMAN | ||||||||
| UniProt AC | P15172 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.892 | 27.243 | 32.213 | 13.652 |
| 02 | 1.078 | 75.922 | 0.0 | 0.0 |
| 03 | 74.844 | 0.0 | 2.156 | 0.0 |
| 04 | 3.712 | 27.303 | 37.722 | 8.263 |
| 05 | 3.712 | 62.151 | 9.221 | 1.916 |
| 06 | 0.0 | 1.916 | 0.0 | 75.084 |
| 07 | 0.0 | 1.916 | 71.97 | 3.114 |
| 08 | 4.79 | 17.963 | 7.185 | 47.062 |
| 09 | 3.143 | 42.362 | 1.227 | 30.267 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.407 | 0.332 | 0.493 | -0.322 |
| 02 | -2.241 | 1.332 | -2.93 | -2.93 |
| 03 | 1.317 | -2.93 | -1.836 | -2.93 |
| 04 | -1.444 | 0.334 | 0.646 | -0.777 |
| 05 | -1.444 | 1.134 | -0.68 | -1.913 |
| 06 | -2.93 | -1.913 | -2.93 | 1.321 |
| 07 | -2.93 | -1.913 | 1.279 | -1.577 |
| 08 | -1.242 | -0.065 | -0.9 | 0.862 |
| 09 | -1.57 | 0.759 | -2.174 | 0.433 |