Model info
| Transcription factor | MNX1 | ||||||||
| Model | MNX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | hbWYTYdMnWhWCYhYnhh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 27 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | MNX{3.1.1.13} | ||||||||
| HGNC | 4979 | ||||||||
| EntrezGene | 3110 | ||||||||
| UniProt ID | MNX1_HUMAN | ||||||||
| UniProt AC | P50219 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.25 | 13.25 | 2.25 | 3.25 |
| 02 | 3.0 | 6.0 | 7.0 | 11.0 |
| 03 | 15.0 | 2.0 | 3.0 | 7.0 |
| 04 | 3.5 | 4.5 | 2.5 | 16.5 |
| 05 | 0.0 | 0.0 | 2.0 | 25.0 |
| 06 | 3.0 | 7.0 | 1.0 | 16.0 |
| 07 | 9.0 | 2.0 | 6.0 | 10.0 |
| 08 | 12.0 | 9.0 | 0.0 | 6.0 |
| 09 | 10.0 | 4.0 | 4.0 | 9.0 |
| 10 | 6.0 | 2.0 | 3.0 | 16.0 |
| 11 | 10.0 | 8.0 | 2.0 | 7.0 |
| 12 | 16.0 | 2.0 | 0.0 | 9.0 |
| 13 | 1.0 | 23.0 | 2.0 | 1.0 |
| 14 | 2.0 | 12.0 | 2.0 | 11.0 |
| 15 | 7.0 | 13.0 | 0.0 | 7.0 |
| 16 | 0.25 | 8.25 | 4.25 | 14.25 |
| 17 | 4.25 | 5.25 | 4.25 | 13.25 |
| 18 | 9.5 | 5.5 | 3.5 | 8.5 |
| 19 | 10.0 | 5.0 | 4.0 | 8.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.181 | 0.62 | -0.902 | -0.62 |
| 02 | -0.683 | -0.104 | 0.032 | 0.445 |
| 03 | 0.737 | -0.987 | -0.683 | 0.032 |
| 04 | -0.561 | -0.352 | -0.824 | 0.827 |
| 05 | -2.218 | -2.218 | -0.987 | 1.227 |
| 06 | -0.683 | 0.032 | -1.424 | 0.798 |
| 07 | 0.26 | -0.987 | -0.104 | 0.357 |
| 08 | 0.527 | 0.26 | -2.218 | -0.104 |
| 09 | 0.357 | -0.451 | -0.451 | 0.26 |
| 10 | -0.104 | -0.987 | -0.683 | 0.798 |
| 11 | 0.357 | 0.153 | -0.987 | 0.032 |
| 12 | 0.798 | -0.987 | -2.218 | 0.26 |
| 13 | -1.424 | 1.146 | -0.987 | -1.424 |
| 14 | -0.987 | 0.527 | -0.987 | 0.445 |
| 15 | 0.032 | 0.602 | -2.218 | 0.032 |
| 16 | -1.953 | 0.181 | -0.401 | 0.688 |
| 17 | -0.401 | -0.221 | -0.401 | 0.62 |
| 18 | 0.31 | -0.18 | -0.561 | 0.208 |
| 19 | 0.357 | -0.263 | -0.451 | 0.153 |