Transcription factor | Nr3c2 | ||||||||
Model | MCR_MOUSE.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 17 | ||||||||
Quality | D | ||||||||
Consensus | hAGWMCARSTKGTdGKR | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 8 | ||||||||
TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C){2.1.1.1} | ||||||||
MGI | 99459 | ||||||||
EntrezGene | |||||||||
UniProt ID | MCR_MOUSE | ||||||||
UniProt AC | Q8VII8 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.722 | 1.722 | 0.722 | 1.833 |
02 | 4.889 | 0.0 | 0.0 | 2.111 |
03 | 0.889 | 0.0 | 6.111 | 0.0 |
04 | 2.889 | 0.0 | 2.0 | 2.111 |
05 | 3.222 | 2.889 | 0.889 | 0.0 |
06 | 0.0 | 5.222 | 0.889 | 0.889 |
07 | 4.111 | 0.0 | 0.0 | 2.889 |
08 | 1.389 | 1.167 | 4.167 | 0.278 |
09 | 1.167 | 1.389 | 4.167 | 0.278 |
10 | 1.278 | 0.278 | 0.278 | 5.167 |
11 | 0.0 | 1.111 | 1.778 | 4.111 |
12 | 1.111 | 0.0 | 5.889 | 0.0 |
13 | 3.111 | 0.0 | 0.0 | 3.889 |
14 | 2.0 | 0.0 | 2.0 | 3.0 |
15 | 0.0 | 2.111 | 4.889 | 0.0 |
16 | 0.889 | 0.0 | 2.0 | 4.111 |
17 | 3.278 | 0.278 | 2.278 | 1.167 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.361 | -0.012 | -0.615 | 0.037 |
02 | 0.877 | -1.525 | -1.525 | 0.15 |
03 | -0.486 | -1.525 | 1.082 | -1.525 |
04 | 0.412 | -1.525 | 0.106 | 0.15 |
05 | 0.506 | 0.412 | -0.486 | -1.525 |
06 | -1.525 | 0.937 | -0.486 | -0.486 |
07 | 0.721 | -1.525 | -1.525 | 0.412 |
08 | -0.176 | -0.302 | 0.733 | -1.074 |
09 | -0.302 | -0.176 | 0.733 | -1.074 |
10 | -0.237 | -1.074 | -1.074 | 0.927 |
11 | -1.525 | -0.336 | 0.012 | 0.721 |
12 | -0.336 | -1.525 | 1.048 | -1.525 |
13 | 0.475 | -1.525 | -1.525 | 0.671 |
14 | 0.106 | -1.525 | 0.106 | 0.444 |
15 | -1.525 | 0.15 | 0.877 | -1.525 |
16 | -0.486 | -1.525 | 0.106 | 0.721 |
17 | 0.521 | -1.074 | 0.212 | -0.302 |