Transcription factor | LMX1A | ||||||||
Model | LMX1A_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 19 | ||||||||
Quality | D | ||||||||
Consensus | YAATTAAWWnKnYWATTWn | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 23 | ||||||||
TF family | HD-LIM factors{3.1.5} | ||||||||
TF subfamily | Lmx{3.1.5.6} | ||||||||
HGNC | 6653 | ||||||||
EntrezGene | 4009 | ||||||||
UniProt ID | LMX1A_HUMAN | ||||||||
UniProt AC | Q8TE12 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 1.75 | 5.75 | 1.75 | 13.75 |
02 | 20.5 | 0.5 | 0.5 | 1.5 |
03 | 21.0 | 0.0 | 0.0 | 2.0 |
04 | 0.0 | 1.0 | 0.0 | 22.0 |
05 | 0.0 | 1.0 | 0.0 | 22.0 |
06 | 23.0 | 0.0 | 0.0 | 0.0 |
07 | 19.0 | 1.0 | 3.0 | 0.0 |
08 | 4.0 | 3.0 | 1.0 | 15.0 |
09 | 5.0 | 0.0 | 2.0 | 16.0 |
10 | 9.0 | 3.0 | 3.0 | 8.0 |
11 | 1.0 | 4.0 | 6.0 | 12.0 |
12 | 3.0 | 2.0 | 9.0 | 9.0 |
13 | 3.0 | 5.0 | 0.0 | 15.0 |
14 | 11.0 | 3.0 | 1.0 | 8.0 |
15 | 17.0 | 1.0 | 0.0 | 5.0 |
16 | 7.0 | 0.0 | 0.0 | 16.0 |
17 | 5.25 | 0.25 | 0.25 | 17.25 |
18 | 11.0 | 1.0 | 3.0 | 8.0 |
19 | 9.5 | 1.5 | 2.5 | 9.5 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.947 | 0.0 | -0.947 | 0.799 |
02 | 1.181 | -1.627 | -1.627 | -1.051 |
03 | 1.204 | -2.121 | -2.121 | -0.853 |
04 | -2.121 | -1.298 | -2.121 | 1.249 |
05 | -2.121 | -1.298 | -2.121 | 1.249 |
06 | 1.292 | -2.121 | -2.121 | -2.121 |
07 | 1.108 | -1.298 | -0.546 | -2.121 |
08 | -0.312 | -0.546 | -1.298 | 0.882 |
09 | -0.122 | -2.121 | -0.853 | 0.943 |
10 | 0.404 | -0.546 | -0.546 | 0.296 |
11 | -1.298 | -0.312 | 0.038 | 0.671 |
12 | -0.546 | -0.853 | 0.404 | 0.404 |
13 | -0.546 | -0.122 | -2.121 | 0.882 |
14 | 0.59 | -0.546 | -1.298 | 0.296 |
15 | 1.001 | -1.298 | -2.121 | -0.122 |
16 | 0.175 | -2.121 | -2.121 | 0.943 |
17 | -0.08 | -1.844 | -1.844 | 1.015 |
18 | 0.59 | -1.298 | -0.546 | 0.296 |
19 | 0.454 | -1.051 | -0.688 | 0.454 |