Model info
Transcription factorLMX1A
ModelLMX1A_HUMAN.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHT-SELEX
Model length19
Quality
D
ConsensusYAATTAAWWnKnYWATTWn
wAUC
Best AUC
Benchmark datasets
Aligned words23
TF familyHD-LIM factors{3.1.5}
TF subfamilyLmx{3.1.5.6}
HGNC6653
EntrezGene4009
UniProt IDLMX1A_HUMAN
UniProt ACQ8TE12
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.0491
0.0005 4.9861
0.0001 6.9461
PCM
ACGT
011.755.751.7513.75
0220.50.50.51.5
0321.00.00.02.0
040.01.00.022.0
050.01.00.022.0
0623.00.00.00.0
0719.01.03.00.0
084.03.01.015.0
095.00.02.016.0
109.03.03.08.0
111.04.06.012.0
123.02.09.09.0
133.05.00.015.0
1411.03.01.08.0
1517.01.00.05.0
167.00.00.016.0
175.250.250.2517.25
1811.01.03.08.0
199.51.52.59.5
PWM
ACGT
01-0.9470.0-0.9470.799
021.181-1.627-1.627-1.051
031.204-2.121-2.121-0.853
04-2.121-1.298-2.1211.249
05-2.121-1.298-2.1211.249
061.292-2.121-2.121-2.121
071.108-1.298-0.546-2.121
08-0.312-0.546-1.2980.882
09-0.122-2.121-0.8530.943
100.404-0.546-0.5460.296
11-1.298-0.3120.0380.671
12-0.546-0.8530.4040.404
13-0.546-0.122-2.1210.882
140.59-0.546-1.2980.296
151.001-1.298-2.121-0.122
160.175-2.121-2.1210.943
17-0.08-1.844-1.8441.015
180.59-1.298-0.5460.296
190.454-1.051-0.6880.454