Model info
| Transcription factor | LHX6 | ||||||||
| Model | LHX6_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Consensus | vYTAATTASbvhWRATTR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 192 | ||||||||
| TF family | HD-LIM factors{3.1.5} | ||||||||
| TF subfamily | Lhx-6-like factors{3.1.5.5} | ||||||||
| HGNC | 21735 | ||||||||
| EntrezGene | 26468 | ||||||||
| UniProt ID | LHX6_HUMAN | ||||||||
| UniProt AC | Q9UPM6 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 68.25 | 40.25 | 58.25 | 25.25 |
| 02 | 13.0 | 96.0 | 15.0 | 68.0 |
| 03 | 1.25 | 2.25 | 1.25 | 187.25 |
| 04 | 178.0 | 1.0 | 13.0 | 0.0 |
| 05 | 192.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 192.0 |
| 07 | 0.0 | 7.0 | 1.0 | 184.0 |
| 08 | 181.0 | 0.0 | 11.0 | 0.0 |
| 09 | 24.0 | 26.0 | 139.0 | 3.0 |
| 10 | 16.0 | 86.0 | 20.0 | 70.0 |
| 11 | 64.0 | 29.0 | 80.0 | 19.0 |
| 12 | 20.0 | 65.0 | 18.0 | 89.0 |
| 13 | 29.0 | 17.0 | 8.0 | 138.0 |
| 14 | 111.0 | 3.0 | 43.0 | 35.0 |
| 15 | 149.5 | 4.5 | 8.5 | 29.5 |
| 16 | 29.75 | 2.75 | 1.75 | 157.75 |
| 17 | 23.5 | 8.5 | 7.5 | 152.5 |
| 18 | 112.25 | 7.25 | 38.25 | 34.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.344 | -0.171 | 0.189 | -0.619 |
| 02 | -1.237 | 0.68 | -1.106 | 0.34 |
| 03 | -2.957 | -2.627 | -2.957 | 1.341 |
| 04 | 1.291 | -3.059 | -1.237 | -3.625 |
| 05 | 1.366 | -3.625 | -3.625 | -3.625 |
| 06 | -3.625 | -3.625 | -3.625 | 1.366 |
| 07 | -3.625 | -1.78 | -3.059 | 1.324 |
| 08 | 1.308 | -3.625 | -1.387 | -3.625 |
| 09 | -0.667 | -0.591 | 1.046 | -2.436 |
| 10 | -1.047 | 0.571 | -0.839 | 0.369 |
| 11 | 0.281 | -0.487 | 0.5 | -0.887 |
| 12 | -0.839 | 0.296 | -0.937 | 0.605 |
| 13 | -0.487 | -0.991 | -1.667 | 1.039 |
| 14 | 0.823 | -2.436 | -0.107 | -0.306 |
| 15 | 1.118 | -2.138 | -1.614 | -0.47 |
| 16 | -0.462 | -2.496 | -2.778 | 1.171 |
| 17 | -0.687 | -1.614 | -1.722 | 1.138 |
| 18 | 0.834 | -1.751 | -0.22 | -0.327 |