Transcription factor | LHX4 | ||||||||
Model | LHX4_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | dnvYTAATKdn | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 1423 | ||||||||
TF family | HD-LIM factors{3.1.5} | ||||||||
TF subfamily | Lhx-3-like factors{3.1.5.4} | ||||||||
HGNC | 21734 | ||||||||
EntrezGene | 89884 | ||||||||
UniProt ID | LHX4_HUMAN | ||||||||
UniProt AC | Q969G2 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 551.0 | 98.0 | 314.0 | 450.0 |
02 | 501.75 | 328.75 | 281.75 | 300.75 |
03 | 535.25 | 212.25 | 538.25 | 127.25 |
04 | 96.0 | 498.0 | 91.0 | 728.0 |
05 | 9.0 | 1.0 | 2.0 | 1401.0 |
06 | 1393.0 | 0.0 | 20.0 | 0.0 |
07 | 1412.0 | 0.0 | 1.0 | 0.0 |
08 | 5.75 | 0.75 | 2.75 | 1403.75 |
09 | 166.5 | 119.5 | 280.5 | 846.5 |
10 | 770.25 | 105.25 | 401.25 | 136.25 |
11 | 400.75 | 272.75 | 444.75 | 294.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.443 | -1.269 | -0.117 | 0.241 |
02 | 0.349 | -0.071 | -0.225 | -0.16 |
03 | 0.414 | -0.506 | 0.419 | -1.012 |
04 | -1.289 | 0.342 | -1.342 | 0.72 |
05 | -3.492 | -4.838 | -4.534 | 1.374 |
06 | 1.368 | -5.277 | -2.79 | -5.277 |
07 | 1.382 | -5.277 | -4.838 | -5.277 |
08 | -3.849 | -4.931 | -4.354 | 1.376 |
09 | -0.746 | -1.074 | -0.229 | 0.871 |
10 | 0.777 | -1.199 | 0.127 | -0.945 |
11 | 0.126 | -0.257 | 0.229 | -0.18 |