Model info
| Transcription factor | LHX3 | ||||||||
| Model | LHX3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | ddAWTTAATTAdh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 72 | ||||||||
| TF family | HD-LIM factors{3.1.5} | ||||||||
| TF subfamily | Lhx-3-like factors{3.1.5.4} | ||||||||
| HGNC | 6595 | ||||||||
| EntrezGene | 8022 | ||||||||
| UniProt ID | LHX3_HUMAN | ||||||||
| UniProt AC | Q9UBR4 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 39.219 | 5.201 | 13.095 | 14.485 |
| 02 | 37.52 | 2.953 | 15.362 | 16.165 |
| 03 | 57.229 | 6.837 | 7.343 | 0.591 |
| 04 | 42.292 | 1.519 | 11.268 | 16.921 |
| 05 | 0.759 | 0.506 | 1.519 | 69.216 |
| 06 | 0.0 | 0.0 | 0.759 | 71.241 |
| 07 | 72.0 | 0.0 | 0.0 | 0.0 |
| 08 | 71.241 | 0.0 | 0.759 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 72.0 |
| 10 | 1.562 | 0.759 | 1.266 | 68.413 |
| 11 | 67.95 | 0.0 | 1.519 | 2.531 |
| 12 | 33.764 | 6.793 | 23.761 | 7.681 |
| 13 | 12.028 | 18.571 | 11.437 | 29.964 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.748 | -1.112 | -0.297 | -0.204 |
| 02 | 0.705 | -1.556 | -0.149 | -0.101 |
| 03 | 1.117 | -0.88 | -0.818 | -2.441 |
| 04 | 0.821 | -1.997 | -0.435 | -0.058 |
| 05 | -2.345 | -2.494 | -1.997 | 1.304 |
| 06 | -2.881 | -2.881 | -2.345 | 1.333 |
| 07 | 1.343 | -2.881 | -2.881 | -2.881 |
| 08 | 1.333 | -2.881 | -2.345 | -2.881 |
| 09 | -2.881 | -2.881 | -2.881 | 1.343 |
| 10 | -1.98 | -2.345 | -2.1 | 1.293 |
| 11 | 1.286 | -2.881 | -1.997 | -1.667 |
| 12 | 0.603 | -0.886 | 0.264 | -0.779 |
| 13 | -0.376 | 0.03 | -0.422 | 0.487 |