Model info
| Transcription factor | LHX2 | ||||||||
| Model | LHX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | hdnWTKTAATWAS | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 7 | ||||||||
| TF family | HD-LIM factors{3.1.5} | ||||||||
| TF subfamily | Lhx-2-like factors{3.1.5.3} | ||||||||
| HGNC | 6594 | ||||||||
| EntrezGene | 9355 | ||||||||
| UniProt ID | LHX2_HUMAN | ||||||||
| UniProt AC | P50458 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.291 | 3.242 | 0.258 | 2.209 |
| 02 | 3.213 | 0.803 | 2.066 | 0.918 |
| 03 | 1.033 | 2.984 | 1.951 | 1.033 |
| 04 | 2.18 | 0.0 | 1.951 | 2.869 |
| 05 | 1.033 | 0.0 | 0.0 | 5.967 |
| 06 | 1.033 | 0.0 | 1.951 | 4.016 |
| 07 | 0.0 | 3.098 | 0.0 | 3.902 |
| 08 | 7.0 | 0.0 | 0.0 | 0.0 |
| 09 | 7.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 7.0 |
| 11 | 2.066 | 0.0 | 0.803 | 4.131 |
| 12 | 4.934 | 0.0 | 2.066 | 0.0 |
| 13 | 0.516 | 1.434 | 4.533 | 0.516 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.23 | 0.511 | -1.1 | 0.187 |
| 02 | 0.503 | -0.55 | 0.132 | -0.465 |
| 03 | -0.387 | 0.439 | 0.086 | -0.387 |
| 04 | 0.176 | -1.525 | 0.086 | 0.406 |
| 05 | -0.387 | -1.525 | -1.525 | 1.06 |
| 06 | -0.387 | -1.525 | 0.086 | 0.7 |
| 07 | -1.525 | 0.472 | -1.525 | 0.674 |
| 08 | 1.208 | -1.525 | -1.525 | -1.525 |
| 09 | 1.208 | -1.525 | -1.525 | -1.525 |
| 10 | -1.525 | -1.525 | -1.525 | 1.208 |
| 11 | 0.132 | -1.525 | -0.55 | 0.725 |
| 12 | 0.885 | -1.525 | 0.132 | -1.525 |
| 13 | -0.802 | -0.152 | 0.808 | -0.802 |