Model info
| Transcription factor | ISX | ||||||||
| Model | ISX_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | bTAATTARnhhWhhdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 14859 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | ISX{3.1.3.12} | ||||||||
| HGNC | 28084 | ||||||||
| EntrezGene | 91464 | ||||||||
| UniProt ID | ISX_HUMAN | ||||||||
| UniProt AC | Q2M1V0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1499.14 | 5357.832 | 1869.365 | 6415.832 |
| 02 | 146.224 | 662.218 | 121.798 | 14211.929 |
| 03 | 14824.206 | 105.328 | 107.308 | 105.328 |
| 04 | 15141.179 | 0.33 | 0.33 | 0.33 |
| 05 | 0.0 | 0.0 | 0.0 | 15142.169 |
| 06 | 1.32 | 1.32 | 46.782 | 15092.747 |
| 07 | 8628.609 | 5.942 | 6504.318 | 3.301 |
| 08 | 3563.417 | 1803.2 | 9558.689 | 216.863 |
| 09 | 4187.127 | 5129.279 | 1945.863 | 3879.9 |
| 10 | 2987.689 | 2531.178 | 2114.984 | 7508.318 |
| 11 | 4847.329 | 2165.005 | 1355.752 | 6774.084 |
| 12 | 8069.354 | 1445.043 | 603.032 | 5024.74 |
| 13 | 7064.101 | 1220.029 | 1034.429 | 5823.611 |
| 14 | 6788.484 | 1781.501 | 932.627 | 5639.558 |
| 15 | 5472.549 | 1104.84 | 1866.472 | 6698.309 |
| 16 | 4568.244 | 2007.626 | 2573.86 | 5992.44 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.925 | 0.347 | -0.705 | 0.527 |
| 02 | -3.238 | -1.74 | -3.418 | 1.322 |
| 03 | 1.365 | -3.56 | -3.542 | -3.56 |
| 04 | 1.386 | -7.233 | -7.233 | -7.233 |
| 05 | -7.361 | -7.361 | -7.361 | 1.386 |
| 06 | -6.924 | -6.924 | -4.344 | 1.383 |
| 07 | 0.824 | -6.118 | 0.541 | -6.498 |
| 08 | -0.06 | -0.741 | 0.926 | -2.849 |
| 09 | 0.101 | 0.304 | -0.665 | 0.025 |
| 10 | -0.237 | -0.402 | -0.582 | 0.685 |
| 11 | 0.247 | -0.558 | -1.026 | 0.582 |
| 12 | 0.757 | -0.962 | -1.834 | 0.283 |
| 13 | 0.624 | -1.131 | -1.296 | 0.431 |
| 14 | 0.584 | -0.753 | -1.399 | 0.398 |
| 15 | 0.368 | -1.23 | -0.706 | 0.57 |
| 16 | 0.188 | -0.634 | -0.385 | 0.459 |