Model info
| Transcription factor | IRX2 | ||||||||
| Model | IRX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Consensus | vbdbKdndKKdYRTGKdvd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 19310 | ||||||||
| TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
| TF subfamily | IRX (Iroquois){3.1.4.1} | ||||||||
| HGNC | 14359 | ||||||||
| EntrezGene | 153572 | ||||||||
| UniProt ID | IRX2_HUMAN | ||||||||
| UniProt AC | Q9BZI1 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7908.25 | 3455.25 | 4593.25 | 3349.25 |
| 02 | 3372.5 | 8285.5 | 3949.5 | 3698.5 |
| 03 | 8152.75 | 2474.75 | 4292.75 | 4385.75 |
| 04 | 2925.5 | 3019.5 | 5888.5 | 7472.5 |
| 05 | 2509.5 | 1521.5 | 12370.5 | 2904.5 |
| 06 | 3429.75 | 1944.75 | 8388.75 | 5542.75 |
| 07 | 2688.75 | 4104.75 | 6976.75 | 5535.75 |
| 08 | 5519.75 | 947.75 | 4780.75 | 8057.75 |
| 09 | 1560.5 | 760.5 | 8642.5 | 8342.5 |
| 10 | 2681.0 | 565.0 | 12292.0 | 3768.0 |
| 11 | 4336.5 | 546.5 | 7461.5 | 6961.5 |
| 12 | 1299.0 | 14092.0 | 893.0 | 3022.0 |
| 13 | 9519.5 | 24.5 | 8849.5 | 912.5 |
| 14 | 25.5 | 113.5 | 6436.5 | 12730.5 |
| 15 | 23.0 | 20.0 | 19248.0 | 15.0 |
| 16 | 983.25 | 1086.25 | 2504.25 | 14732.25 |
| 17 | 6498.5 | 1603.5 | 4479.5 | 6724.5 |
| 18 | 4654.0 | 4166.0 | 7672.0 | 2814.0 |
| 19 | 3664.25 | 2653.25 | 7996.25 | 4992.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.494 | -0.334 | -0.05 | -0.365 |
| 02 | -0.358 | 0.54 | -0.2 | -0.266 |
| 03 | 0.524 | -0.667 | -0.117 | -0.096 |
| 04 | -0.5 | -0.469 | 0.199 | 0.437 |
| 05 | -0.654 | -1.153 | 0.941 | -0.508 |
| 06 | -0.341 | -0.908 | 0.553 | 0.138 |
| 07 | -0.585 | -0.162 | 0.368 | 0.137 |
| 08 | 0.134 | -1.626 | -0.01 | 0.512 |
| 09 | -1.128 | -1.845 | 0.582 | 0.547 |
| 10 | -0.588 | -2.141 | 0.935 | -0.247 |
| 11 | -0.107 | -2.174 | 0.435 | 0.366 |
| 12 | -1.311 | 1.071 | -1.685 | -0.468 |
| 13 | 0.679 | -5.188 | 0.606 | -1.663 |
| 14 | -5.151 | -3.729 | 0.288 | 0.97 |
| 15 | -5.245 | -5.37 | 1.383 | -5.622 |
| 16 | -1.589 | -1.49 | -0.656 | 1.116 |
| 17 | 0.297 | -1.101 | -0.075 | 0.331 |
| 18 | -0.036 | -0.147 | 0.463 | -0.539 |
| 19 | -0.275 | -0.598 | 0.505 | 0.034 |