Model info
| Transcription factor | Irf5 | ||||||||
| Model | IRF5_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 20 | ||||||||
| Quality | D | ||||||||
| Consensus | KAAAGGAAAGCnAAAAGTGM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 5 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-5{3.5.3.0.5} | ||||||||
| MGI | 1350924 | ||||||||
| EntrezGene | 27056 | ||||||||
| UniProt ID | IRF5_MOUSE | ||||||||
| UniProt AC | P56477 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.889 | 0.0 | 1.889 | 2.222 |
| 02 | 3.889 | 0.0 | 1.111 | 0.0 |
| 03 | 5.0 | 0.0 | 0.0 | 0.0 |
| 04 | 5.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 4.111 | 0.889 |
| 06 | 0.889 | 0.0 | 4.111 | 0.0 |
| 07 | 3.111 | 0.0 | 1.889 | 0.0 |
| 08 | 5.0 | 0.0 | 0.0 | 0.0 |
| 09 | 5.0 | 0.0 | 0.0 | 0.0 |
| 10 | 1.889 | 0.0 | 3.111 | 0.0 |
| 11 | 0.0 | 5.0 | 0.0 | 0.0 |
| 12 | 1.111 | 2.111 | 0.889 | 0.889 |
| 13 | 4.0 | 0.0 | 1.0 | 0.0 |
| 14 | 5.0 | 0.0 | 0.0 | 0.0 |
| 15 | 5.0 | 0.0 | 0.0 | 0.0 |
| 16 | 3.222 | 0.0 | 0.0 | 1.778 |
| 17 | 0.0 | 2.111 | 2.889 | 0.0 |
| 18 | 2.222 | 0.0 | 0.0 | 2.778 |
| 19 | 0.0 | 0.0 | 4.111 | 0.889 |
| 20 | 3.444 | 1.111 | 0.222 | 0.222 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.247 | -1.413 | 0.327 | 0.463 |
| 02 | 0.954 | -1.413 | -0.088 | -1.413 |
| 03 | 1.185 | -1.413 | -1.413 | -1.413 |
| 04 | 1.185 | -1.413 | -1.413 | -1.413 |
| 05 | -1.413 | -1.413 | 1.005 | -0.247 |
| 06 | -0.247 | -1.413 | 1.005 | -1.413 |
| 07 | 0.754 | -1.413 | 0.327 | -1.413 |
| 08 | 1.185 | -1.413 | -1.413 | -1.413 |
| 09 | 1.185 | -1.413 | -1.413 | -1.413 |
| 10 | 0.327 | -1.413 | 0.754 | -1.413 |
| 11 | -1.413 | 1.185 | -1.413 | -1.413 |
| 12 | -0.088 | 0.419 | -0.247 | -0.247 |
| 13 | 0.98 | -1.413 | -0.164 | -1.413 |
| 14 | 1.185 | -1.413 | -1.413 | -1.413 |
| 15 | 1.185 | -1.413 | -1.413 | -1.413 |
| 16 | 0.786 | -1.413 | -1.413 | 0.277 |
| 17 | -1.413 | 0.419 | 0.689 | -1.413 |
| 18 | 0.463 | -1.413 | -1.413 | 0.655 |
| 19 | -1.413 | -1.413 | 1.005 | -0.247 |
| 20 | 0.845 | -0.088 | -0.973 | -0.973 |