Model info
| Transcription factor | Irf4 | ||||||||
| Model | IRF4_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 16 | ||||||||
| Quality | C | ||||||||
| Consensus | vWRRvRGRAAMhRAAA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2115 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-4 (LSIRF, NF-EM5, MUM1, Pip){3.5.3.0.4} | ||||||||
| MGI | 1096873 | ||||||||
| EntrezGene | 16364 | ||||||||
| UniProt ID | IRF4_MOUSE | ||||||||
| UniProt AC | Q64287 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 812.022 | 337.928 | 419.516 | 213.108 |
| 02 | 1114.849 | 127.141 | 245.981 | 294.604 |
| 03 | 1127.773 | 103.198 | 319.631 | 231.973 |
| 04 | 1040.976 | 37.413 | 394.981 | 309.205 |
| 05 | 782.839 | 200.32 | 666.908 | 132.508 |
| 06 | 1147.464 | 101.813 | 346.419 | 186.878 |
| 07 | 411.634 | 1.978 | 1354.978 | 13.984 |
| 08 | 906.383 | 2.382 | 873.19 | 0.618 |
| 09 | 1777.973 | 4.601 | 0.0 | 0.0 |
| 10 | 1778.466 | 0.614 | 1.969 | 1.524 |
| 11 | 664.85 | 612.248 | 504.899 | 0.576 |
| 12 | 443.576 | 169.472 | 168.35 | 1001.175 |
| 13 | 304.861 | 86.762 | 1361.965 | 28.986 |
| 14 | 1586.977 | 43.973 | 123.331 | 28.293 |
| 15 | 1258.458 | 34.891 | 487.549 | 1.675 |
| 16 | 1577.536 | 90.217 | 113.583 | 1.239 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.598 | -0.275 | -0.06 | -0.733 |
| 02 | 0.914 | -1.244 | -0.591 | -0.412 |
| 03 | 0.926 | -1.449 | -0.331 | -0.649 |
| 04 | 0.846 | -2.433 | -0.12 | -0.364 |
| 05 | 0.562 | -0.794 | 0.402 | -1.203 |
| 06 | 0.943 | -1.462 | -0.251 | -0.863 |
| 07 | -0.079 | -4.756 | 1.109 | -3.34 |
| 08 | 0.708 | -4.656 | 0.671 | -5.192 |
| 09 | 1.381 | -4.236 | -5.477 | -5.477 |
| 10 | 1.381 | -5.193 | -4.758 | -4.881 |
| 11 | 0.399 | 0.316 | 0.124 | -5.208 |
| 12 | -0.005 | -0.96 | -0.967 | 0.807 |
| 13 | -0.378 | -1.619 | 1.114 | -2.674 |
| 14 | 1.267 | -2.278 | -1.274 | -2.697 |
| 15 | 1.035 | -2.499 | 0.09 | -4.838 |
| 16 | 1.261 | -1.581 | -1.355 | -4.969 |