Model info
| Transcription factor | IRF3 | ||||||||
| Model | IRF3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Consensus | RRAAASbGAAAvbdvdh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 46 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-3{3.5.3.0.3} | ||||||||
| HGNC | 6118 | ||||||||
| EntrezGene | 3661 | ||||||||
| UniProt ID | IRF3_HUMAN | ||||||||
| UniProt AC | Q14653 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.26 | 6.147 | 28.58 | 3.087 |
| 02 | 9.631 | 2.039 | 30.704 | 1.7 |
| 03 | 39.315 | 1.02 | 3.739 | 0.0 |
| 04 | 43.054 | 0.0 | 0.0 | 1.02 |
| 05 | 40.222 | 0.0 | 1.813 | 2.039 |
| 06 | 6.685 | 11.217 | 25.153 | 1.02 |
| 07 | 5.665 | 16.995 | 8.611 | 12.803 |
| 08 | 3.739 | 0.906 | 38.635 | 0.793 |
| 09 | 43.281 | 0.0 | 0.793 | 0.0 |
| 10 | 43.054 | 0.0 | 0.0 | 1.02 |
| 11 | 42.488 | 1.586 | 0.0 | 0.0 |
| 12 | 8.724 | 21.414 | 10.877 | 3.059 |
| 13 | 1.02 | 14.956 | 11.557 | 16.542 |
| 14 | 13.483 | 2.946 | 19.714 | 7.931 |
| 15 | 19.374 | 6.911 | 14.956 | 2.833 |
| 16 | 22.433 | 4.079 | 12.576 | 4.985 |
| 17 | 21.527 | 7.138 | 6.911 | 8.498 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.507 | -0.523 | 0.903 | -1.087 |
| 02 | -0.123 | -1.388 | 0.973 | -1.509 |
| 03 | 1.213 | -1.806 | -0.938 | -2.537 |
| 04 | 1.302 | -2.537 | -2.537 | -1.806 |
| 05 | 1.236 | -2.537 | -1.467 | -1.388 |
| 06 | -0.45 | 0.016 | 0.78 | -1.806 |
| 07 | -0.593 | 0.405 | -0.225 | 0.139 |
| 08 | -0.938 | -1.865 | 1.196 | -1.928 |
| 09 | 1.307 | -2.537 | -1.928 | -2.537 |
| 10 | 1.302 | -2.537 | -2.537 | -1.806 |
| 11 | 1.289 | -1.553 | -2.537 | -2.537 |
| 12 | -0.213 | 0.625 | -0.012 | -1.094 |
| 13 | -1.806 | 0.284 | 0.044 | 0.38 |
| 14 | 0.187 | -1.123 | 0.546 | -0.298 |
| 15 | 0.53 | -0.42 | 0.284 | -1.153 |
| 16 | 0.67 | -0.867 | 0.122 | -0.702 |
| 17 | 0.63 | -0.392 | -0.42 | -0.237 |