Model info
| Transcription factor | IRF2 | ||||||||
| Model | IRF2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | bRAAARYGAAASbv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 84 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-2{3.5.3.0.2} | ||||||||
| HGNC | 6117 | ||||||||
| EntrezGene | 3660 | ||||||||
| UniProt ID | IRF2_HUMAN | ||||||||
| UniProt AC | P14316 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.424 | 22.576 | 34.301 | 14.699 |
| 02 | 19.899 | 3.215 | 58.62 | 1.267 |
| 03 | 73.062 | 1.851 | 7.307 | 0.779 |
| 04 | 78.556 | 0.0 | 0.877 | 3.567 |
| 05 | 82.562 | 0.0 | 0.0 | 0.438 |
| 06 | 17.024 | 9.646 | 52.92 | 3.41 |
| 07 | 3.751 | 30.612 | 3.215 | 45.422 |
| 08 | 3.702 | 0.0 | 79.298 | 0.0 |
| 09 | 81.685 | 0.0 | 1.315 | 0.0 |
| 10 | 81.539 | 0.974 | 0.0 | 0.487 |
| 11 | 80.954 | 1.072 | 0.0 | 0.974 |
| 12 | 4.384 | 28.079 | 45.081 | 5.456 |
| 13 | 5.749 | 33.108 | 13.127 | 31.017 |
| 14 | 29.383 | 14.54 | 26.584 | 12.494 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.556 | 0.08 | 0.482 | -0.324 |
| 02 | -0.04 | -1.621 | 1.005 | -2.221 |
| 03 | 1.222 | -2.001 | -0.955 | -2.451 |
| 04 | 1.293 | -2.985 | -2.401 | -1.543 |
| 05 | 1.342 | -2.985 | -2.985 | -2.651 |
| 06 | -0.187 | -0.709 | 0.905 | -1.577 |
| 07 | -1.504 | 0.372 | -1.621 | 0.756 |
| 08 | -1.514 | -2.985 | 1.303 | -2.985 |
| 09 | 1.332 | -2.985 | -2.201 | -2.985 |
| 10 | 1.33 | -2.353 | -2.985 | -2.62 |
| 11 | 1.323 | -2.307 | -2.985 | -2.353 |
| 12 | -1.382 | 0.289 | 0.748 | -1.203 |
| 13 | -1.16 | 0.448 | -0.429 | 0.385 |
| 14 | 0.333 | -0.334 | 0.237 | -0.474 |