Model info
| Transcription factor | Irf1 | ||||||||
| Model | IRF1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Consensus | RAAAvYGAAAbh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 135 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-1{3.5.3.0.1} | ||||||||
| MGI | 96590 | ||||||||
| EntrezGene | 16362 | ||||||||
| UniProt ID | IRF1_MOUSE | ||||||||
| UniProt AC | P15314 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 40.706 | 6.691 | 79.849 | 2.939 |
| 02 | 107.424 | 3.001 | 18.133 | 1.626 |
| 03 | 128.559 | 0.0 | 1.0 | 0.625 |
| 04 | 130.185 | 0.0 | 0.0 | 0.0 |
| 05 | 21.76 | 37.142 | 61.653 | 9.629 |
| 06 | 20.885 | 32.953 | 4.627 | 71.72 |
| 07 | 3.877 | 1.876 | 124.432 | 0.0 |
| 08 | 127.934 | 0.0 | 2.251 | 0.0 |
| 09 | 128.684 | 1.501 | 0.0 | 0.0 |
| 10 | 130.185 | 0.0 | 0.0 | 0.0 |
| 11 | 11.005 | 46.396 | 54.4 | 18.383 |
| 12 | 14.976 | 38.111 | 10.599 | 66.499 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.216 | -1.452 | 0.876 | -2.095 |
| 02 | 1.169 | -2.08 | -0.557 | -2.475 |
| 03 | 1.346 | -3.323 | -2.723 | -2.908 |
| 04 | 1.359 | -3.323 | -3.323 | -3.323 |
| 05 | -0.385 | 0.128 | 0.622 | -1.136 |
| 06 | -0.424 | 0.012 | -1.754 | 0.77 |
| 07 | -1.891 | -2.39 | 1.314 | -3.323 |
| 08 | 1.342 | -3.323 | -2.276 | -3.323 |
| 09 | 1.347 | -2.52 | -3.323 | -3.323 |
| 10 | 1.359 | -3.323 | -3.323 | -3.323 |
| 11 | -1.016 | 0.344 | 0.499 | -0.544 |
| 12 | -0.735 | 0.153 | -1.05 | 0.696 |