Model info
| Transcription factor | IRF1 | ||||||||
| Model | IRF1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Consensus | vvRRvnGAAASYGAAASYvv | ||||||||
| wAUC | 0.8598975607196054 | ||||||||
| Best AUC | 0.9062813994728953 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 293 | ||||||||
| TF family | Interferon-regulatory factors{3.5.3} | ||||||||
| TF subfamily | IRF-1{3.5.3.0.1} | ||||||||
| HGNC | 6116 | ||||||||
| EntrezGene | 3659 | ||||||||
| UniProt ID | IRF1_HUMAN | ||||||||
| UniProt AC | P10914 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.698 | 49.3 | 112.915 | 45.723 |
| 02 | 166.889 | 31.747 | 67.152 | 27.848 |
| 03 | 191.506 | 19.116 | 47.535 | 35.479 |
| 04 | 190.893 | 29.954 | 50.769 | 22.02 |
| 05 | 57.894 | 67.707 | 128.143 | 39.893 |
| 06 | 66.083 | 64.779 | 66.391 | 96.383 |
| 07 | 60.708 | 4.007 | 222.615 | 6.306 |
| 08 | 273.004 | 2.161 | 14.382 | 4.089 |
| 09 | 275.726 | 7.094 | 8.577 | 2.239 |
| 10 | 281.576 | 3.856 | 4.447 | 3.756 |
| 11 | 35.431 | 50.078 | 206.714 | 1.413 |
| 12 | 30.928 | 63.609 | 6.744 | 192.356 |
| 13 | 8.961 | 4.092 | 280.584 | 0.0 |
| 14 | 252.486 | 6.92 | 32.373 | 1.857 |
| 15 | 269.237 | 9.232 | 14.336 | 0.832 |
| 16 | 279.559 | 2.275 | 9.035 | 2.768 |
| 17 | 4.548 | 103.106 | 180.211 | 5.771 |
| 18 | 19.222 | 74.065 | 15.682 | 184.667 |
| 19 | 110.619 | 39.267 | 116.535 | 27.215 |
| 20 | 139.132 | 56.238 | 73.421 | 24.845 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.152 | -0.389 | 0.424 | -0.462 |
| 02 | 0.811 | -0.814 | -0.087 | -0.939 |
| 03 | 0.947 | -1.293 | -0.424 | -0.707 |
| 04 | 0.944 | -0.869 | -0.36 | -1.161 |
| 05 | -0.232 | -0.079 | 0.549 | -0.594 |
| 06 | -0.103 | -0.123 | -0.098 | 0.268 |
| 07 | -0.186 | -2.624 | 1.097 | -2.271 |
| 08 | 1.299 | -3.039 | -1.555 | -2.609 |
| 09 | 1.309 | -2.173 | -2.013 | -3.018 |
| 10 | 1.33 | -2.652 | -2.546 | -2.671 |
| 11 | -0.708 | -0.374 | 1.023 | -3.274 |
| 12 | -0.839 | -0.14 | -2.215 | 0.951 |
| 13 | -1.975 | -2.608 | 1.327 | -3.964 |
| 14 | 1.222 | -2.194 | -0.795 | -3.128 |
| 15 | 1.286 | -1.949 | -1.558 | -3.503 |
| 16 | 1.323 | -3.008 | -1.968 | -2.883 |
| 17 | -2.529 | 0.334 | 0.887 | -2.342 |
| 18 | -1.288 | 0.009 | -1.476 | 0.911 |
| 19 | 0.404 | -0.609 | 0.455 | -0.961 |
| 20 | 0.63 | -0.261 | 0.0 | -1.047 |