Model info
| Transcription factor | Hoxd9 | ||||||||
| Model | HXD9_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Consensus | AnWTTnATnn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 6 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| MGI | 96210 | ||||||||
| EntrezGene | 15438 | ||||||||
| UniProt ID | HXD9_MOUSE | ||||||||
| UniProt AC | P28357 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.25 | 0.25 | 0.25 | 0.25 |
| 02 | 3.0 | 0.0 | 3.0 | 0.0 |
| 03 | 2.0 | 1.0 | 0.0 | 3.0 |
| 04 | 1.0 | 0.0 | 0.0 | 5.0 |
| 05 | 0.0 | 0.0 | 0.0 | 6.0 |
| 06 | 2.0 | 1.0 | 1.0 | 2.0 |
| 07 | 6.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 6.0 |
| 09 | 0.0 | 0.0 | 3.0 | 3.0 |
| 10 | 2.25 | 0.25 | 2.25 | 1.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.073 | -1.026 | -1.026 | -1.026 |
| 02 | 0.571 | -1.47 | 0.571 | -1.47 |
| 03 | 0.228 | -0.297 | -1.47 | 0.571 |
| 04 | -0.297 | -1.47 | -1.47 | 1.028 |
| 05 | -1.47 | -1.47 | -1.47 | 1.197 |
| 06 | 0.228 | -0.297 | -0.297 | 0.228 |
| 07 | 1.197 | -1.47 | -1.47 | -1.47 |
| 08 | -1.47 | -1.47 | -1.47 | 1.197 |
| 09 | -1.47 | -1.47 | 0.571 | 0.571 |
| 10 | 0.326 | -1.026 | 0.326 | -0.137 |